Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3135 156 1e-32 seq2903 131 5e-25 seq1220 113 1e-19 seq2078 89.7 2e-12 >seq3135 Length=1315 Score = 156 bits (172), Expect = 1e-32 Identities = 334/488 (68%), Gaps = 17/488 (3%) Strand=Plus/Plus Query 288848 TCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTG 288907 |||||||||| || || | ||| |||||||| || ||||||| ||| | | |||||| Sbjct 814 TCCTATCAAATCTTCCTGGACGTGTTAATGCGGGATCTAATACATCAGAACGATTTGTTC 873 Query 288908 CTGCCAATACAACAA-TAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 |||| || || | | | ||| ||| ||||||||||||| | | ||| ||| Sbjct 874 CTGCTAAAACTATTACTCCATTAT-TTTCAGTAAATCCATCCATTTCTACAAGAATCTGA 932 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATT---TGAACCTCTTGAATCACCCGAATC-GCTCCt 289022 ||||| || ||| || |||||||| |||| | | ||||| | || | Sbjct 933 TTAAGAGTGCTTTCTCTCTCATCATTAGATGAAGCAGCAAATCCACCCCCTTTTGCACGC 992 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 ||| || ||||| ||||||||||| ||||| |||| | || ||||| || ||| || Sbjct 993 TTTCTT-CCAACTGCATCAATTTCATCAATAAAAACAATACTTGGAGATAATTTTCTTGC 1051 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 || ||||||||||||||| | ||| || | |||||| | || || | ||| || Sbjct 1052 CTGTGAAAATAATTCTCTTACTCTACTTGCACCCATTCCAACAAAAATCTCAATAAAATC 1111 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 | | |||| | || |||| |||||| ||||| || || || || | |||| | Sbjct 1112 ACTTCCAGATATATAAAAAAATGGTACATTAGCTTCACCAGCAACAGCTTTTGCCAATAA 1171 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||| ||||| || || |||||||| | |||| | | || ||||||| |||||| ||| Sbjct 1172 TGTTTTACCGGTACCTGGTGGTCCTACCAATAAAGCACCTTTTGGTATTTTTGCACCA-- 1229 Query 289263 AGA-CTT---ATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| ||| || ||| | || || ||||| |||||||| | ||| | | ||| | | Sbjct 1230 AGATCTTGAAATCTTTTT---GGATCTTTTAAGAATTCTACCAATTCATATATTTCTTGT 1286 Query 289318 TTTGCCTC 289325 || || || Sbjct 1287 TTGGCTTC 1294 >seq2903 Length=4097 Score = 131 bits (144), Expect = 5e-25 Identities = 287/423 (68%), Gaps = 14/423 (3%) Strand=Plus/Minus Query 154538 ATAATAAATACCTGTCTTTAGCCCTGCCCGCCAACCATAGAAATGCATATTTGTTAATGA 154597 ||||||||| ||||| ||||| ||| ||||||||| ||||||||| || ||| Sbjct 1273 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 1214 Query 154598 TTTAGGCTCTGGGTCTTCCATCCATAAAT--TCATACTCTGCGATTGGCAAATATATAAT 154655 | | | | | |||||| || ||| ||| | |||||||| |||| |||| Sbjct 1213 TGCAAAGTTAGCATTTTCCAT--ATGAATGTTCAAAGATTGCGATTGACAAACATATGGA 1156 Query 154656 CCGCGGTCACGAGCCATATCAATTAGTGTCTTCATTTTAATTTCCCATACAATCTTGTAT 154715 || | || |||||||||||||| |||||| ||||||||||||||| |||| || Sbjct 1155 CCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAA 1096 Query 154716 TTCTCTTTAATATGTTCTGGTAGTCCATCAATATATTGAACGCTTCCCTTGTTGGCAATA 154775 ||| |||| ||| || | | | |||| ||||| ||| || || || |||||| Sbjct 1095 AGCTCGCGTATATCTTCCGGAATTGTAAGTATATTTTGAATGCTGCCATTATTTGCAATA 1036 Query 154776 ATATTGTTCTTGACGCTTTCATCCCATAGTTTTAGTGCCAGTAGTTCATCGACCAGAT-- 154833 ||||| | ||| | || |||||||||| || | |||| |||| | || || Sbjct 1035 ATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGC 976 Query 154834 --ATTTATTAACCATCGTAAATTCACCCGCCAGAGTTTTCCTGCTG-TAAATATTACTTG 154890 ||||| || || | || ||||| | || | | | | || ||||| || | Sbjct 975 GGATTTACTA--CAAAG--AACTCACCAGATAGTACTCTAC-GATGATAAATGTTCGAGG 921 Query 154891 TAATTGGCTCAAAGCACTCGTTATTACCTAAAATCTGGCTTGTGCTTGCTGTAGGCATGG 154950 ||| ||||||||| | ||| || ||||||||||| || ||| |||||| ||||| | Sbjct 920 TAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTG 861 Query 154951 GAG 154953 ||| Sbjct 860 GAG 858 >seq1220 Length=885 Score = 113 bits (124), Expect = 1e-19 Identities = 344/529 (65%), Gaps = 7/529 (1%) Strand=Plus/Minus Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038 ||||||||||||| | || | || || ||| |||| || ||||||| ||| Sbjct 845 CCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAA 786 Query 156039 ATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTG 156095 || |||| ||| || | ||| || ||| ||||| | ||||| |||||| | ||| Sbjct 785 ATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTA 726 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA 156155 | || | ||||| ||||| | ||||| || | ||||| ||||| ||||||| ||| Sbjct 725 TAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAA 666 Query 156156 CCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGA 156215 |||| | | || |||| | | |||| |||||| | ||| ||| | Sbjct 665 CCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTT 606 Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275 ||||||| ||| || | || ||||| | || ||||| ||| || |||| | Sbjct 605 GCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAA 546 Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 | || || | |||||||||||| || || | || || ||||| |||||||||||| Sbjct 545 AAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGA 486 Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTC--CTTAATCTTCTCAAGATTAGACC 156393 ||||||| || | || | | || ||||| || | | || |||| || | | Sbjct 485 GTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCT--TCAATATCACCAC 428 Query 156394 CGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCAT 156453 ||||||| |||||||| |||| | ||| || || | || |||| | Sbjct 427 AATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGT 368 Query 156454 CAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATC 156502 ||||| ||||| || | | ||| |||||||| || | |||||||| Sbjct 367 CAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATC 319 >seq2078 Length=657 Score = 89.7 bits (98), Expect = 2e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 448899 GAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGATAAAAATCCAGAT 448958 ||||| |||||| |||||| | | | ||| | ||| |||||||||||||| || ||| Sbjct 440 GAAATAAAGAAGTCATATAGAAAATTAGCATTAAAATGGCATCCTGATAAAAACCCTGAT 381 Query 448959 AATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTATGAAATT 449012 |||| || ||| || ||||||| |||||| ||||| | ||||||| ||| || Sbjct 380 AATAGAGAAGAAGCTGAGGAGATGTTCAAAAAGATTGCAGAAGCTTACGAAGTT 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471756199449272