Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2837 190 4e-43 seq693 127 4e-24 >seq2837 Length=6166 Score = 190 bits (210), Expect = 4e-43 Identities = 162/200 (81%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| |||| ||| || || ||||| ||||| || ||||||||| ||||||| ||||| Sbjct 5967 ACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTACCATCTTCC 6026 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||| |||||||||||||| || | |||||||| ||||| || || |||||||| || Sbjct 6027 AATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATACCCTCCTTATCCTGG 6086 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 |||||||| |||||||| ||||| ||||| |||||| |||||||| || || ||||| Sbjct 6087 ATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTGATGGTCTTT 6146 Query 82782 CCTGTCAACGTCTTTACAAA 82801 ||||| || || || ||||| Sbjct 6147 CCTGTTAAAGTTTTGACAAA 6166 >seq693 Length=1622 Score = 127 bits (140), Expect = 4e-24 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 82708 CTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCA 82767 |||||||||||||||||||||| || ||||| ||||| ||||| |||||| ||||||| Sbjct 1622 CTTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCA 1563 Query 82768 AAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTTT 82822 |||| || ||||| |||||||| ||||| ||||| |||||||| || |||| || Sbjct 1562 AAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTGTATTCTT 1508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981786240623784