Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2559 259 7e-64 seq2903 217 2e-51 seq1220 174 2e-38 >seq2559 Length=3356 Score = 259 bits (286), Expect = 7e-64 Identities = 592/878 (67%), Gaps = 15/878 (2%) Strand=Plus/Plus Query 39302 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAA 39358 || ||||| |||| |||||||| |||| ||||||||||| | || ||||| || Sbjct 1591 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 1650 Query 39359 TTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt 39418 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| | || || Sbjct 1651 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 1710 Query 39419 ttttttttAA-ATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTT 39477 ||||| || |||| || | ||| |||||||| ||||||||||| || ||| Sbjct 1711 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 1769 Query 39478 CATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTT 39537 ||| | | ||||||| || || || | ||| || |||| || ||||| | | | Sbjct 1770 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 1829 Query 39538 TTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAA 39597 ||| | || || || |||| ||| || | |||| || || ||| | || Sbjct 1830 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACT--CTAGGAGCT-GGTAATTTAAA 1886 Query 39598 TAAATG---TTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAAT 39654 | | | |||| | ||||| || || || ||| ||| || || ||||| | |||||| Sbjct 1887 TTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTAAT 1946 Query 39655 TAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGC 39714 | ||| ||||||||||||||||||||||| || ||||| ||||| |||||||| || || Sbjct 1947 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGC 2006 Query 39715 AGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTC 39773 | |||||| | |||||||| | || ||||| || || ||| ||| || ||| || Sbjct 2007 A-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 2065 Query 39774 CGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAG 39833 | || | ||| || ||||| || |||||| || |||||||| |||||| Sbjct 2066 CAAAAGATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTT 2125 Query 39834 GCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTAT 39893 || || || | |||||| || ||| | | | || ||| |||| ||| Sbjct 2126 CAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTAT 2185 Query 39894 CTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAA 39953 | || | | ||| |||| ||| || | |||||| | ||| ||||| | ||| Sbjct 2186 CAATAAGTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAAT 2245 Query 39954 AACATCTTGCTTCAGTAATTTGTACCTCT-GAACAAAATCTTTCCGCCAAATTTTCATTC 40012 | ||| ||||| | ||||||| ||| || |||| || | || || ||||| | Sbjct 2246 ACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATA 2304 Query 40013 ACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG 40072 || || |||||||| || ||||| ||||| || |||| ||| ||||||| | ||||| | Sbjct 2305 ACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGG 2364 Query 40073 GGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 40132 | | | | | ||| || | |||||| || ||| | |||||||| |||| Sbjct 2365 TCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAA 2424 Query 40133 AACGACGCCTCTGCCTTTTTGTACATGTTCCATATATC 40170 |||||||| || || ||||| ||||| ||| ||||| Sbjct 2425 AACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 2462 >seq2903 Length=4097 Score = 217 bits (240), Expect = 2e-51 Identities = 846/1319 (64%), Gaps = 28/1319 (2%) Strand=Plus/Minus Query 68367 ATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGT 68426 ||| | |||||| || ||||| | ||| || || | || ||| || || || || Sbjct 1318 ATCTACTGTAAATTGTATGGGGCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGT 1259 Query 68427 TTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATC 68486 ||| |||||| |||| || || ||||||||| || || || | | | | | || Sbjct 1258 TTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATT 1199 Query 68487 GGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCAT 68546 | |||||||| |||| ||||| |||| | | | || |||||||| ||||| Sbjct 1198 TTCCATATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCAT 1139 Query 68547 TTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATC 68606 | || | ||||||| ||||||||| | ||||||| ||| || ||||| || Sbjct 1138 ATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGTATATCTTC 1079 Query 68607 TGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTC 68663 |||| | ||||||||||| ||| || | ||||| | | ||| | | Sbjct 1078 CGGAATTGTAAGTATATTTTGAATGCTGCCATTATTTGCAATAATATTCTGCTTAAGCCT 1019 Query 68664 ATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAA 68723 ||||| ||| || ||| |||| | | || | ||||||||| |||| || Sbjct 1018 ATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAA 959 Query 68724 TTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 68783 || ||||||| ||||||||| ||||| || |||| |||| || | | ||||| Sbjct 958 CTCACCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATT 899 Query 68784 ATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCT 68843 || || | |||||| | ||| ||||| |||||||| || | | |||| | ||| | Sbjct 898 GTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACG 839 Query 68844 AAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGA---TGG 68900 || ||||||| | || ||||||| || | |||||| ||||| |||| ||| Sbjct 838 AATACCATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGG 779 Query 68901 TACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGT 68960 | ||| ||| | ||| |||||| ||| || ||||| ||| || || |||||| Sbjct 778 TGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGT 719 Query 68961 TTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAAT 69020 ||| || || || | | ||| || || ||||| || || || | || | ||||| || Sbjct 718 TTCGTATGGACCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGAT 659 Query 69021 TGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTC--TAGACTATCGAATGGATAATGT 69078 ||| ||||| | ||||| | | | ||| | |||| ||| | || | | Sbjct 658 AACTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTACGGCATACGA 601 Query 69079 AAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTA 69138 | | ||||| ||||| | || |||| ||||| || | || | |||||| | Sbjct 600 AGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAA 541 Query 69139 TTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT- 69197 || || ||| | ||| | || |||||| || || || | |||||| | ||| Sbjct 540 TTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTC 481 Query 69198 -TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTC----CATCT 69252 ||| | | || || || || |||| || ||||||||| |||| || | Sbjct 480 CTCGTA--ATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTT 424 Query 69253 ATAACAAACATATT---CAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 || ||| | || || | | ||| || |||||||| || || || || | | Sbjct 423 TTATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTG 364 Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 | | |||| ||| || ||||| |||| ||||| | ||||| |||| ||||| | Sbjct 363 CTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTC 304 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 || ||||| || | || || || || ||| |||||| || || || || ||||| Sbjct 303 TGGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATT 244 Query 69430 TGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGT---CTTGTAACGC 69486 |||| | | || | ||||| | || || || || | ||| | || Sbjct 243 TGAGCCTGTAAGATTAAGAACCAAAGTTTCTGCGCTTTCAT--CGTTTTCCTTCCACGGC 186 Query 69487 TTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 | | ||| ||||| | | ||||||| | || ||||| ||||||||||| | |||| Sbjct 185 CT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAAT 127 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 || ||||||| ||| ||||| | | ||| | | ||| | || ||||| || ||| Sbjct 126 CCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATG 67 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665 || ||||| |||| |||||| || ||||||||| | ||| | ||||| ||||| Sbjct 66 AACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCC 8 >seq1220 Length=885 Score = 174 bits (192), Expect = 2e-38 Identities = 389/578 (67%), Gaps = 7/578 (1%) Strand=Plus/Minus Query 69633 AAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTC 69692 ||||||||| | ||| | ||||| ||||| ||| || | | || | |||||| Sbjct 876 AAAGAGATCGCGACATCTCATCTCTTCCTTTCCGTGATTCTTCCTGATTTCAATAAACTC 817 Query 69693 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCC 69752 | || |||| ||||| || || | ||| || || ||| | || || || ||| Sbjct 816 TACAACATCAACGTGCCACGGCTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCC 757 Query 69753 TCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATT 69812 || ||||| || || || ||||||| |||||| || | |||||||||||| | ||||| Sbjct 756 ACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATT 697 Query 69813 AGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAG 69872 |||| | ||||||||||| |||||| || || | | ||||||||| | | | Sbjct 696 AGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCAC 637 Query 69873 ACCTATTCCTCCTGCCATTTTA--GAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 || | || || || | ||| | || | ||| ||| | ||||||| | ||| Sbjct 636 CCCAAGACCACCCGCAGTCTTACTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATA 579 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATA 69990 || | ||| ||| ||| || | || | |||||| ||||||||| | || | Sbjct 578 CCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGA 519 Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || | |||||| | ||| || | ||| ||||| || |||||| || | || | Sbjct 518 GTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCA 459 Query 70051 TATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||||||| || | ||| ||||| |||| |||||| || | ||| ||||||| Sbjct 458 TATGTTTCAAGTGCAGCTTCAATATCACCAC-AATGAATACCACAAGAGACCCGCATCAG 400 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 | ||| || |||| ||| || ||| || | ||||| | || || ||| |||| || Sbjct 399 AAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAG 340 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTT 70207 |||||| || ||||||| | |||| ||| || |||| Sbjct 339 AGTTTTGAAGGCAAAATAATCGTATTCAAAATC-CTTT 303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686880842811840