Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2559 113 4e-20 >seq2559 Length=3356 Score = 113 bits (124), Expect = 4e-20 Identities = 374/567 (66%), Gaps = 20/567 (4%) Strand=Plus/Minus Query 43727 GACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGAT 43786 || || ||| |||||| |||||||| | ||||| |||||| | |||||| ||||| Sbjct 2462 GATATTTGGTCAATGTATAAAAAAGCTGAAGCGTCGTTTTGGGTTACTGAAGAAATTGAT 2403 Query 43787 TTGACTAAAGACT-TAGCACATTGG-ATTGCATTAAAACCACAAGAAAAACATTTTATAT 43844 | | | |||| ||| | ||||| | | ||||| | | |||| ||||||||| Sbjct 2402 CTAAGTCAAGATACTAG-AGATTGGGAAAGTCTTAAAGACCCT-GAAAGACATTTTATCA 2345 Query 43845 CTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTC 43904 | ||||| || || |||||||| || || || || || | ||||| || | ||| Sbjct 2344 AATATGTTTTAGCATTCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTAGC-AGTA 2286 Query 43905 GGTTTGCGCA-AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 ||| | | |||| | ||| |||| ||||| || | ||||| |||||||| | Sbjct 2285 AATTTCCTTAGAGAAATACAAATACCGGAAGCTAGAATGTATTATGCTTTTCAAATGTCT 2226 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGG 44023 || ||| | || ||| |||| || | || || |||| || || | || Sbjct 2225 ATTGAACAAATACATAGTGAAACTTATTCATTACTTATTGATAGATATATTACTGAAATT 2166 Query 44024 CACGAGAAGCATCGATTG---TTTAATGCGATAG---AAACAGTACCTGCGATTAAACAT 44077 | |||| | || | || ||| | || || | | | | ||| | ||| | Sbjct 2165 AA--AGAA-CGTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTG---TAAAAAAG 2112 Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTC 44137 |||||||| ||||| ||||||||| ||||| | ||||||| ||| || || | Sbjct 2111 AAAGCAGAATGGGCAACTAAATGGATGAATTCTGAGCGATCTTTTGCTGAAAGAATTATT 2052 Query 44138 GCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTT 44196 | || | ||| ||||| ||| | ||||| || | | |||| | | || |||||| | Sbjct 2051 GGATTCTGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTG-CAATTTTTTGGCT 1993 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 || ||||| || | |||||||| | || ||||| ||||| | || ||||||||||| Sbjct 1992 TAAAAAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGA 1933 Query 44257 AGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| | ||| ||||||||||| || Sbjct 1932 AGGTCTCCATGCTGATTTTGCTTGTTT 1906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397440227952280