Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1220 86.0 7e-12 >seq1220 Length=885 Score = 86.0 bits (94), Expect = 7e-12 Identities = 324/501 (65%), Gaps = 13/501 (3%) Strand=Plus/Plus Query 104214 TGGAAACCCCACAGTACATGTTC--ATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 |||||| ||||| |||| ||| ||||| || | ||||||||| | | || || Sbjct 380 TGGAAAGACCACA--ACATCTTCTGATGCGGGTCTCTTGTGGTATTCATTGTGGTGATAT 437 Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACAC 104330 ||| ||| | || ||||| || | | || ||| ||| || | ||| ||||||| Sbjct 438 TGAAGCTGCACTTGAAACATATGAGTTGTTATCGCAAAAATATTTT-ACTCATGCAACAC 496 Query 104331 CAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCA 104390 | || ||||| ||| | || || ||| |||| |||||||| ||| || | || | Sbjct 497 CCACACTCTTTAATTCAGGCACTCCACGACCTCAAATGTCATCTTGTTTTTTACTCAGGA 556 Query 104391 ACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA- 104449 || || ||||| |||||||||| || || || || | || |||||| | | Sbjct 557 TTCCAGAAGATTCAATAAACGGTATCTTTGACACACTAACTAAATG--CGCAAACATTAG 614 Query 104450 -AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT 104508 ||| || || ||| ||||| || | | || | |||| | | || ||| Sbjct 615 TAAGACTGCGGGTGGTCTTGGGGTGGCAGTGAGTAATATTAGAGGAACTGGTTCATATAT 674 Query 104509 TCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 104568 ||| || |||||||| ||| |||| | ||||| ||||| ||||| | ||| | ||| Sbjct 675 TCGAGGAACAAATGGGAGATCTAATGGATTAATTCCGATGCTGCGCGTTTATAATGACAC 734 Query 104569 AGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGA 104625 || | ||| | |||||| ||| | || || || | || ||| | ||| | || Sbjct 735 TGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCAATTTATTTGGA 794 Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685 ||| ||||||| ||| | | ||||| |||| | | || || || | || || Sbjct 795 GCCGTGGCACGTTGATGTTGTAGAGTTTATTGAAATCAGGAAGAATCACGGAAAGGAAGA 854 Query 104686 GGCGCGGTGCCGCGATCTCTT 104706 | | | || ||||||||||| Sbjct 855 GATGAGATGTCGCGATCTCTT 875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583237061285440