Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2559 206 2e-48 >seq2559 Length=3356 Score = 206 bits (228), Expect = 2e-48 Identities = 575/860 (67%), Gaps = 29/860 (3%) Strand=Plus/Plus Query 4258 TTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTT 4317 |||| ||||| |||| |||||||||||| |||||||| |||| | |||||| | Sbjct 1619 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 1678 Query 4318 CCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCA 4377 |||| ||||||| ||||||| ||||||| |||| | | | || | ||| | Sbjct 1679 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 1738 Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGT-TCGCAGTTAATTCCAATTA-A 4435 ||| ||||| |||||||| ||||| ||| ||| ||| ||| | || || ||||| | | Sbjct 1739 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAA-TTCATACCAATAAGA 1797 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 || ||||| || | || | ||| | | ||| | || ||||||| || || Sbjct 1798 TCA-ACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 1856 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTAC---TAAGTA-TCCAAACAATAAACACG 4551 | || || | || || |||| ||||| |||| | | | | |||||| | Sbjct 1857 TTGTTGTACTCTAGG---AGCTGGTA-ATTTAAATTTAAGGGCTTTATATATTAAACAAG 1912 Query 4552 CAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGG 4611 |||||||| ||| | |||||| || | ||||| ||||| |||||||| || | ||| | Sbjct 1913 CAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAG 1972 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGC 4671 |||| | || | |||||||||||||| || || ||| |||||||| | || | Sbjct 1973 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTC 2032 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCC 4731 |||| || || || | | | |||| | || || | ||| | || | ||| Sbjct 2033 CTTCAACAGCA-CAGAATCCAATAATTCTTTCAGCAAA-AGATCGCTCAGAATTCA-TCC 2089 Query 4732 ATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAAT-TGTGTATATAGCGTTAAAT 4790 |||| |||||| | ||||| || || || ||| || | | || || | ||| Sbjct 2090 ATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAA-ATTGCTTCAAAG 2148 Query 4791 A--ATTT-ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATT 4847 | |||| || || || || | || |||||| | || || |||| ||| || Sbjct 2149 AGCATTTGACGTTCTTTAATT---TCAGTAATATATCTATCAATAAGTAATGAATAAGTT 2205 Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACT 4907 ||| |||||| | ||| |||| || ||||| | ||| | ||||||||| | || | Sbjct 2206 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGGTATT 2265 Query 4908 TGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCA 4967 || | ||| || || || || |||||||||| | || ||||| ||||| || ||| Sbjct 2266 TGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATACCATCACTTGCAGCA 2325 Query 4968 AAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCT---TAAGTTTTTTCCAG 5024 || || || ||||||| ||||| | | || ||||| | |||| ||| ||| Sbjct 2326 AAGAATGCTAAAACATATTTGATAAAATG-TCTT--TCAGGGTCTTTAAGACTTTCCCAA 2382 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084 | ||||| | ||| ||||| ||||||| | ||||||||||||||| |||||| Sbjct 2383 TCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCTTTT 2442 Query 5085 TTGTACATAGACCAAATATC 5104 || ||||| ||||||||||| Sbjct 2443 TTATACATTGACCAAATATC 2462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427032653604248