Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2903 251 1e-61 seq2559 206 4e-48 seq1220 145 1e-29 >seq2903 Length=4097 Score = 251 bits (278), Expect = 1e-61 Identities = 833/1276 (65%), Gaps = 26/1276 (2%) Strand=Plus/Minus Query 76817 TAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTG-TCA 76875 || ||| || || || ||||||||||| |||| || || |||||||| || | | Sbjct 1276 TAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAA 1217 Query 76876 GTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAG 76935 |||| || | ||| || | |||||||| |||| || || |||| | | | Sbjct 1216 CTTTGCAA-AGTTAGCATTTTCCATATGAATGTTCAAAGATTGCGATTGACAAACATATG 1158 Query 76936 CTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGA 76995 || ||||| || ||||| | || | |||||||| ||||||||| | ||| || Sbjct 1157 GACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTAT 1098 Query 76996 AAA-CTTGTTTGATATCATCTGGAAGGTT---TGTATTTTGAATGGAACCACCATCTGAT 77051 ||| || | | ||||| || |||| | | ||||||||||| ||| || || Sbjct 1097 AAAGCTCGCGT-ATATCTTCCGGAATTGTAAGTATATTTTGAATGCTGCCATTATTTGCA 1039 Query 77052 ATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGA 77111 ||||| | | ||| | ||||| ||| || |||| |||| | | || | | Sbjct 1038 ATAATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAA 979 Query 77112 TGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTA 77171 || ||||| |||| || || ||||| | |||||||||| ||||| || |||| Sbjct 978 TGCGGATTTACTACAAAGAACTCACCAGATAGTACTCTACGATGATAAATGTTCGAGGTA 919 Query 77172 TATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGT 77231 |||| || | | |||||||| || |||||||| | ||| || || |||||||| || Sbjct 918 AATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGA 859 Query 77232 GCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAA 77291 | | |||| | ||| | | ||||||| | || ||||||| || | | |||| Sbjct 858 GATATTAATAGAGAATTACGAATACCATGTTTGGAAATCCTATCTTTAAGCAAATCCCAA 799 Query 77292 TCCCAAAGATCTGA---AGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTA 77348 || ||||| | || ||| ||| |||| | ||| |||||| ||| || ||||| Sbjct 798 TCACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTC 739 Query 77349 GCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCT 77408 ||| || || ||||||||| || || || | | |||| || || ||||| || || Sbjct 738 GCAGGCGAACCGGAATATGTTTCGTATGGACCGTATTTTTCTGCAAGCTCACAGCTAGCG 679 Query 77409 TCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATA 77468 || | ||| | ||||| || ||| ||||| | ||||| | | | ||| | | Sbjct 678 TCGAGAGCTGCATAATAGATAACTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCA 619 Query 77469 CTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCA 77528 || |||| | | | | ||||| ||||| | || |||| ||||| || Sbjct 618 GACTCGTACGGCATACGAAGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCC 559 Query 77529 ATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCT 77588 | || | |||||| ||| || ||||| ||| | || |||||| || ||| Sbjct 558 AATGGACGATGTCTTAAATTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCA 499 Query 77589 ATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCA 77648 || | |||||| | ||| || || || || || || |||| ||| ||||||| Sbjct 498 ATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCA 439 Query 77649 AA--TCTT-CCATCTATAACAA-ACATGTTCAAAG--CTATAGATGCTAGATTACAAACT 77702 || |||| || | || ||| || || ||| | ||||| || |||||||| || Sbjct 438 AACGTCTTGTTATTTTTATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACG 379 Query 77703 GCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATA 77762 || || || | | | | | |||| ||| || || || |||| ||||| | ||| Sbjct 378 GCAACTTCGTCCGTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATA 319 Query 77763 GTGCCCAGATTTTGTTGGTTGCTCTTTTTA-TTGCATGAGTCCTTATAAAGAATAAACGG 77821 || |||| ||||| ||||| || || || ||||| | || |||||| |||||| || Sbjct 318 GTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCA-GCATCTTTATAACAAATAAATGG 260 Query 77822 AGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCAT 77881 ||||| || ||||| || | | | || | ||| | | ||| || || |||| Sbjct 259 TGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCA-AAGTTTCT-GCGCTT-TCAT 203 Query 77882 AGATTTGTATC----GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTC 77937 | ||| || |||| | | | ||||| | ||||||| | ||| ||||| | Sbjct 202 CGTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGC 144 Query 77938 CCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTT 77997 |||||||||| | |||||| |||||||| ||||||||| | | ||| || ||| | Sbjct 143 CCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCT 84 Query 77998 CCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTC 78057 || ||||| || ||| || |||||||| | ||| || ||| ||| ||||| || || Sbjct 83 TCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATC 24 Query 78058 TATGTTCTTCATTTCC 78073 | ||||| ||||| Sbjct 23 TCATCTCTTCCTTTCC 8 >seq2559 Length=3356 Score = 206 bits (228), Expect = 4e-48 Identities = 586/885 (66%), Gaps = 29/885 (3%) Strand=Plus/Plus Query 47826 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAA 47882 || |||||| ||| |||||||| ||||||||||||| || | || ||||| || Sbjct 1591 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 1650 Query 47883 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAA 47942 |||||||| |||| | ||| ||| ||||| ||||||| |||||| | || || Sbjct 1651 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 1710 Query 47943 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTT 48001 |||||| || |||| || | ||| | |||||| ||||| ||||| |||||| Sbjct 1711 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 1769 Query 48002 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTG 48061 ||| | | ||||||| || ||||| | ||| || |||| || |||||| | | Sbjct 1770 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 1829 Query 48062 TTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTC--ACTTGGTGGATAC 48119 ||| | ||||| || ||| || |||| || || | |||| | Sbjct 1830 TTCAACTTCAACAGCTTCTGATATGATT--TGTT---GTACTCTAGGAGCTGGTAATTTA 1884 Query 48120 AACAAATG---TTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTA 48176 || | | |||| | |||||||| ||||||||| ||| ||||||||||| | |||| Sbjct 1885 AATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTA 1944 Query 48177 ATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATT 48236 || | ||| |||||||||||||| || ||||| |||||||||||||| |||||||| ||| Sbjct 1945 ATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATT 2004 Query 48237 GCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 | | | |||| | |||||||| | || ||||| || || ||| | ||| ||| || Sbjct 2005 G-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTC 2063 Query 48296 TCCGTAACTGGCTTCGTTGTGTATCCA-CCGTT---GTGCCCAATCAGCCTTCTTCTTTA 48351 | || ||| | | || || || || |||||| || || ||||| |||| Sbjct 2064 AGCAAAA----GATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTA 2119 Query 48352 CACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGT 48411 || || || || | |||||| | | ||| || | || ||| | Sbjct 2120 CAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATAT 2179 Query 48412 AAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAA 48469 | |||| || | || || ||| |||| || || | |||||| | ||| ||||| Sbjct 2180 ATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAA 2237 Query 48470 TCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATT 48529 | ||| | ||| ||||| | || |||| || || || | | || || || Sbjct 2238 AGCATAATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTT 2297 Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTT 48589 || | || || |||||||| |||||||| |||||||| |||| ||| ||||||| | | Sbjct 2298 TTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCT 2357 Query 48590 TTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 48649 ||| | | || | | ||| || | |||||| || ||| | |||||||| Sbjct 2358 TTCAGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGT 2417 Query 48650 TGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATC 48694 |||||| || || || |||||||||||||| ||| ||||| Sbjct 2418 AACCCAAAACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 2462 >seq1220 Length=885 Score = 145 bits (160), Expect = 1e-29 Identities = 363/549 (66%), Gaps = 2/549 (0%) Strand=Plus/Minus Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| ||||| |||||| | | || | |||||| | || |||| ||||| || Sbjct 854 TCTTCCTTTCCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGC 795 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCG 78182 || | ||| ||||| || | || || || || || ||||| ||||| || || Sbjct 794 TCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCA 735 Query 78183 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAA 78242 |||| ||||||||| | || ||| ||||| | || |||||| | ||||||||||| | Sbjct 734 GTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGA 675 Query 78243 ATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTA 78302 ||||| ||| || | | ||||||||| | | | ||| | || || || ||||| Sbjct 674 ATATATGAACCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTA 615 Query 78303 GATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATG 78362 || ||||| | | ||| || ||||||| | ||| || || || Sbjct 614 CTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATC 555 Query 78363 TTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGA 78422 | || | |||||| ||||||||| | | ||| |||| |||||| | ||| || Sbjct 554 CTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGT 495 Query 78423 GATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATG 78482 | |||||| ||||| |||||| || | | | |||||||||| || | ||| || Sbjct 494 GTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATA 435 Query 78483 TCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTC 78542 || | |||||| || | || ||||||| | ||| || |||||||| || Sbjct 434 TCACCACAATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACT 375 Query 78543 TTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 || || | ||||| || ||| || ||| |||| | |||||| || ||||||| | ||| Sbjct 374 TTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTA 316 Query 78602 TGAAAAGTC 78610 | ||| || Sbjct 315 TTCAAAATC 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694640526979840