Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F002093615.1_202017-04- 14] 3,256 sequences; 9,040,186 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2559 239 6e-58 seq2903 165 1e-35 seq1220 152 7e-32 >seq2559 Length=3356 Score = 239 bits (264), Expect = 6e-58 Identities = 590/880 (67%), Gaps = 19/880 (2%) Strand=Plus/Plus Query 46315 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAA 46371 || ||||| |||| |||||||| |||| |||||||| || | || ||||| || Sbjct 1591 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 1650 Query 46372 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAA 46431 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| ||| || || Sbjct 1651 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 1710 Query 46432 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTT 46490 |||||| || |||| || | ||| | |||||| ||||| ||||| ||||| Sbjct 1711 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 1769 Query 46491 CATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTG 46550 ||| | | ||||||| || || || | || || |||| || |||||| | | Sbjct 1770 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 1829 Query 46551 TTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCA- 46609 ||||| ||||| || ||||| || | |||| | | |||| | | Sbjct 1830 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCTAGGAGC---TGGTAATTTAAA 1886 Query 46610 -TCAAATG-TTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAAT 46667 | || | |||| | |||||||| ||||||||| ||| || |||||||| | |||||| Sbjct 1887 TTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTAAT 1946 Query 46668 TAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 | ||| |||||||||||||| |||||||| |||||||| ||||| |||||||| || | Sbjct 1947 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTG- 2005 Query 46728 CGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 | | |||| | |||||||| | || ||||| ||||| |||| | | || ||| || Sbjct 2006 CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 2065 Query 46787 CGTAA-CTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAA 46845 | || | || ||| || ||||| | ||||| || || || || |||||| Sbjct 2066 CAAAAGATCGC-TCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCT 2124 Query 46846 GGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTA 46905 || || || | |||||| | | ||| | | | || ||| |||| || Sbjct 2125 TCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTA 2184 Query 46906 TCTATTA--AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGT 46963 || || | || || ||| |||| ||| || | |||||||| ||| ||||| | | Sbjct 2185 TCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCAT 2242 Query 46964 AAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCAT 47023 || | ||| ||||| | || |||| ||| || || | | | || || || Sbjct 2243 AATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCA 2302 Query 47024 TCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCAT 47083 | || || |||||||| |||||||| ||||| || |||| ||| ||||||| | ||||| Sbjct 2303 TAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAG 2362 Query 47084 CGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 47143 | | || | | ||| || | |||||| || ||| | |||||||| || Sbjct 2363 GGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCC 2422 Query 47144 AGAATGACGCCTCTGCTTTTTTATACATATTCCATATATC 47183 | || ||||| || |||||||||||||| ||| ||||| Sbjct 2423 AAAACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 2462 >seq2903 Length=4097 Score = 165 bits (182), Expect = 1e-35 Identities = 817/1282 (64%), Gaps = 38/1282 (3%) Strand=Plus/Minus Query 75412 TAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAG 75471 || ||| || || || ||||||||||| |||| || || |||||||| || || Sbjct 1276 TAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAA 1217 Query 75472 TTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGC 75531 || | | | | | || | |||||||| |||| || || |||| | | | Sbjct 1216 CTTTGCAAAGTTAGCATTTTCCATATGAATGTTCAAAGATTGCGATTGACAAACATATGG 1157 Query 75532 TCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAA 75591 || ||||| || ||||| | || | |||||||| ||||||||| | ||| || | Sbjct 1156 ACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATA 1097 Query 75592 AA-CTTGTTTGATATCATCTGGAAGATT---TGTATTTTGAATGGATCCGCCATCAGATA 75647 || || | | ||||| || |||| | | ||||||||||| | ||||| | | Sbjct 1096 AAGCTCGCGT-ATATCTTCCGGAATTGTAAGTATATTTTGAATG---CTGCCATTATTTG 1041 Query 75648 TAATTGTATTCT---TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGA 75704 ||| |||||| | | | ||||| ||| || ||| |||| | | || | Sbjct 1040 CAATAATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCA 981 Query 75705 GATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGG 75764 ||| ||||| || | || || ||||| | |||||| ||| ||||| || || Sbjct 980 AATGCGGATTTACTACAAAGAACTCACCAGATAGTACTCTACGATGATAAATGTTCGAGG 921 Query 75765 TATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAG 75824 || |||| || | | |||||||| || |||||||| | ||| || || || ||||| | Sbjct 920 TAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTG 861 Query 75825 GTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCC 75884 | | | |||| | ||| | | ||||||| | || ||||||| || | | || Sbjct 860 GAGATATTAATAGAGAATTACGAATACCATGTTTGGAAATCCTATCTTTAAGCAAATCCC 801 Query 75885 AATCCCAAAGATCTGA---TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGC 75941 |||| ||||| | || |||| ||| |||| | ||| |||||| ||| || || | Sbjct 800 AATCACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTAC 741 Query 75942 TAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCG 76001 | ||| || || |||||||||||| | |||| ||||| || || || || || | Sbjct 740 TCGCAGGCGAACCGGAATATGTTTCGTATGGACCGTATTTTTCTGCAAGCTCACAGCTAG 681 Query 76002 CCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTA-TTAAGATCTT-GCGCTTC 76059 | || | || | ||||| || ||| ||||| | ||| |||| |||| || | Sbjct 680 CGTCGAGAGCTGCATAATAGATAACTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCT 621 Query 76060 AAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAAT 76119 |||| || | || | | | | ||||| ||||| || || |||| ||||| Sbjct 620 CAGAC--TCGTACGGCATACGAAGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAAT 563 Query 76120 ACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAAT 76179 || | || | |||||| ||| || ||| | ||| | || ||||| || Sbjct 562 CCCCAATGGACGATGTCTTAAATTCGATTTTTTACACTCTTTGAGAGAATAATATCCAAC 503 Query 76180 ATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAA 76239 || || | |||||| | ||| || || || || || || |||| || ||| Sbjct 502 GTCAATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAA 443 Query 76240 ATCAAA-----TTTTCCATCTATC-ACAAACATATTAAGAGCTATAGATGCTAGATTACA 76293 |||||| | || | |||| || || | ||| | ||||| || |||||||| Sbjct 442 ATCAAACGTCTTGTTATTTTTATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACA 383 Query 76294 AACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTT 76353 ||||| || || | | | | |||| ||| || || ||||||| ||||| | Sbjct 382 GACGGCAACTTCGTCCGTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAAC 323 Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATG-AG--TCCTTATAAAGAAC 76410 |||||||| | ||||| ||||| | ||||| || || || || |||||| || Sbjct 322 AATAGTTCCCAAATTTTTCTGGTTAC---TTTTGCTATTTGCAGCATCTTTATAACAAAT 266 Query 76411 AAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 76470 ||| || || || || ||||| || | | | || | ||| | | ||| || | Sbjct 265 AAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCA-AAGTTTCT-GCGCT 208 Query 76471 TATTATAGATTTGTATC----GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATT 76526 | | || | ||| || || | | | | ||||| | | ||||| | | ||| | Sbjct 207 T-TCATCGTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAAT 150 Query 76527 CATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCAC 76586 |||| ||||||||||| | ||| || ||||||| || ||||| | | ||| || Sbjct 149 CATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTT 90 Query 76587 CATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 ||| | || ||| | || ||| || |||||||| | ||| || ||| ||| ||||| | Sbjct 89 GATCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGC 30 Query 76647 GGGTTCTACGTTCTTCATTTCC 76668 | ||| ||||| ||||| Sbjct 29 GACATCTCATCTCTTCCTTTCC 8 >seq1220 Length=885 Score = 152 bits (168), Expect = 7e-32 Identities = 371/556 (67%), Gaps = 7/556 (1%) Strand=Plus/Minus Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 ||||| ||||| |||||| | | || | ||||| | || |||| ||||| || Sbjct 854 TCTTCCTTTCCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGC 795 Query 76718 TCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCA 76777 || | ||| || || || |||| || || || || ||||| ||||| || ||| Sbjct 794 TCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCA 735 Query 76778 GTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAA 76837 |||| ||||||||| | || ||| ||||| | || |||||| | ||||||||||| | Sbjct 734 GTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGA 675 Query 76838 ATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTA 76897 ||||| ||| | | | ||||||||| | | | || | || || || | ||| Sbjct 674 ATATATGAACCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTA 615 Query 76898 --GAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCA 76955 | || | ||| ||| | ||||||| |||| || | ||| ||| || | Sbjct 614 CTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAA 557 Query 76956 TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAG 77015 | | || | |||||| ||||||||| | | ||| |||| |||||| | ||| | Sbjct 556 TCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGG 497 Query 77016 GAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTA 77075 | | ||||||||| || |||||| || | | | |||||||||| | ||||| | Sbjct 496 GTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAA 437 Query 77076 TATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAG 77135 |||| | |||||| || || ||| ||||||| | ||| || |||| ||| ||| Sbjct 436 TATCACCACAATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAA 377 Query 77136 TCTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 77194 || || | ||||| || ||| || ||| |||| | |||||| || ||||||| | | Sbjct 376 CTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCG 318 Query 77195 TATGAAAAGTCTCTTT 77210 ||| ||| || |||| Sbjct 317 TATTCAAAATC-CTTT 303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712905383569920