Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq223 109 1e-18 >seq223 Length=111419 Score = 109 bits (120), Expect = 1e-18 Identities = 374/570 (66%), Gaps = 20/570 (4%) Strand=Plus/Minus Query 230078 AAGAACGGAACGAGCTTTTTGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAA 230137 ||||||| | ||||||||| || || | || | || ||| | || |||||| Sbjct 59400 AAGAACGTCAAATGCTTTTTGAAGCAATCTCTCATATTTCAGCAGTTAAAAAAAAGGCAG 59341 Query 230138 AGTGGGCTCAGAAATGGCTAGAACCTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGG 230197 ||||||| |||||| | | || || ||| ||||| ||| | | | | | Sbjct 59340 AGTGGGCAACTAAATGGATGAATTGTGATAGATCTTTTGCTGAGAGAATTATTGGATTC- 59282 Query 230198 TGTGT-GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAAC 230256 |||| |||||||| || | ||||| || || || || || || |||||||| || Sbjct 59281 TGTGCAGTTGAAGGAATCTTATTTTCTGGTAGCTTTTGTGCTATTTTTTGGCTT---AAA 59225 Query 230257 AAAGGTG---TGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGT 230313 ||| ||| | |||||||| ||| | || ||||| | ||||| || || || || Sbjct 59224 AAACGTGGACTTATGCCTGGACTCACCTTTTCAAACGAACTTATCAGCCGTGATGAAGGA 59165 Query 230314 CTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAGCTCCAGAAC--AAGCTACCA--T 230368 || ||| | || | | ||||| | ||| ||||| | || || |||||| | Sbjct 59164 CTACATGCTGATTTTG-CTTGCTTAATCTAT--AAAGCCCTTAAATTTAAACTACCAACT 59108 Query 230369 TCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTG 230428 || ||| || |||||||||| ||||||| ||||| |||| | ||| |||||| Sbjct 59107 TCTAGA--GTACAACAAATCATCTCAGAAGCTGTTGATGTTGAAAGAAACTTCCTTTGTG 59050 Query 230429 ACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAA 230487 | || |||| ||| | |||||||| ||||| | |||||||| || || || ||| Sbjct 59049 ATTCTCTTCC-TGTTGATCTTATTGGTATGAATTCCAGACTTATGGCTCAATATATTGAA 58991 Query 230488 TTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAAC 230547 || ||||| || | | || |||| | | | | ||| | || || | || Sbjct 58990 TTTGTAGCTGATAGACTACTTTTTGCTTTAGATGTCCCCAAAATATATAATGTCACCAAT 58931 Query 230548 CCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGT 230607 || |||| | ||||| || ||||| || ||||| || || || |||||||||||| | Sbjct 58930 CCTTTTGATTGGATGGACCTTATTTCACTCCAAGGTAAAACAAATTTCTTCGAAAAGAGA 58871 Query 230608 GTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 || | || || || | | |||| || ||| Sbjct 58870 GTTGGAGAATACCAAATGGCTGGAGTAATG 58841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057812438975390