Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq223 143 3e-29 >seq223 Length=111419 Score = 143 bits (158), Expect = 3e-29 Identities = 560/861 (65%), Gaps = 31/861 (4%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||| || | ||| | ||||||||||| || ||||| || | | || ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 |||| ||||||| ||||| || | | |||| || | | | | | || || Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974 Query 16032 ATCTATCTGCTACAAATTCTATATATTGACACATTAAGTC-GCAATTAATTCCTATAAGT 16090 |||||| ||||||||||| ||||||||| ||| ||||| | |||| || || ||||| Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTGGAATTCATACCAATAAGA 59033 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 || ||||||| | | || | | ||| | |||| |||||| ||||| Sbjct 59034 TCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATT 59093 Query 16151 TCGGTGG-CTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAA 16209 | | || ||| | | || || || ||| |||| | |||| || || || Sbjct 59094 T-GTTGTACTCTAGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGCAAA 59152 Query 16210 GTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCAT 16269 || |||||||||||| || | ||||||||||||||| ||||| || | || ||||| Sbjct 59153 ATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGGCAT 59212 Query 16270 TTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTC 16329 ||| ||||| || | ||| || || ||| ||| || ||||| || || || || Sbjct 59213 AAGTCCACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGATTCCTTC 59272 Query 16330 AACAGATGCAAAAGCGATTAATCGT-TCCGCGTACGTAGCATCTTTATTACGA---ATCC 16385 ||| | || || | | |||| | || || | | |||| || || | |||| Sbjct 59273 AACTGCA-CAGAATCCAATAATTCTCTCAGCAAAAG----ATCT--ATCACAATTCATCC 59325 Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTA-TAC--AATCCATCGTTTCTATGGCCTTAA 16442 |||| | |||| || || |||| ||| | | | || || || || | || Sbjct 59326 ATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAA---ATATGAGAGATTGCTTCAA 59382 Query 16443 ACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500 | | |||| | || | | ||| || | ||||| ||||||| ||||| || | || Sbjct 59383 AAAGCATTTGACGTTCT--TTAATTTCAGTAATATATCTATCAATGAGTAA--TGAATAT 59438 Query 16501 TTCTGAGT--GTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCT 16558 ||| | | |||| | || || || || ||||| |||| | || ||| || | | Sbjct 59439 GTCTCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTGGT 59498 Query 16559 ATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 ||||||| ||| | ||||| | |||||| ||| || | || ||||| |||||||| Sbjct 59499 ATTTGTATTTCTCTAAGAAAATT-TACCGCCAAGTTTTCCATAACAATACCATCACTTGC 59557 Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCA 16677 ||||||||| || | | | || || || | | |||| | | ||||| | | ||| Sbjct 59558 AGCAAAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCA 59617 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 |||| | |||||| || ||| | |||||| | |||||| || | || || Sbjct 59618 ATCTCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTT 59677 Query 16738 TTTATACATTTTCCAAATATC 16758 |||||||||| ||||||||| Sbjct 59678 TTTATACATTGACCAAATATC 59698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511408947043960