Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq290 280 2e-70 seq223 221 1e-52 >seq290 Length=478353 Score = 280 bits (310), Expect = 2e-70 Identities = 1149/1801 (64%), Gaps = 38/1801 (2%) Strand=Plus/Plus Query 52846 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTT 52905 ||| || || || ||||||| ||| |||| || ||||||||||| || || || Sbjct 253087 ATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTT 253146 Query 52906 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 52965 | | | | | || | | ||||| ||||||| ||| ||| ||| | | | || Sbjct 253147 TGCAAAGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGACC 253206 Query 52966 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 53024 ||| ||||||||||| | || | ||||||||| ||||||||||| ||| ||||||| Sbjct 253207 CCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 253266 Query 53025 CTCGCTTAATATCTTCTGGAA-GGTTTGTA--TTCTGAATAGATCCACCATCTACCATAA 53081 ||| | | ||||||||||||| || ||| || |||||| |||| || | | || | Sbjct 253267 CTCACGT-ATATCTTCTGGAATTGTAGGTATGTTTTGAATACTTCCATTATTTGCAATTA 253325 Query 53082 TCCTATTCTTGATCTCATCATTCCATAAT----TTTCTCTCGGTTAAAACTCTAAGGAGA 53137 | | | ||| | | ||||| ||||||| |||| | ||| | | || | | Sbjct 253326 TATTTTGCTTAAGCCTATCATCCCATAATCCAAGTTCTAAC----AAATCATTTAGTAAA 253381 Query 53138 TGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 53197 || || || ||||| ||||| ||||| | || || ||| |||||||| ||| Sbjct 253382 TGTGGGTTCACTACAAAGAATTCACCAGATAGCACCCTACGATGATAAATATTTGAAGTA 253441 Query 53198 TACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 53257 | || || | | |||||| || || ||||| || | ||| || ||||| ||||| || Sbjct 253442 AAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCATTGGA 253501 Query 53258 GCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAA 53317 | | || | | ||| | || || || | |||| | ||||| || | ||||| Sbjct 253502 GATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAATCCCAG 253561 Query 53318 TTCCAAAGATCCGA---CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTG 53374 | ||||| | || ||| ||| ||| | ||||| ||||| Sbjct 253562 TCACAAAGCCCAGAATCTGGTGTAACTCCCCACATATCAAATTGCAAGATACCTTTACTC 253621 Query 53375 GCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCC 53434 || ||||| ||||| |||||||| || || || || || || ||||| || ||| Sbjct 253622 GCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGCTAGCC 253681 Query 53435 TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGG 53494 || | || ||||||| || ||| || || | ||||| || | || |||| Sbjct 253682 TCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTTTATCT 253741 Query 53495 CTATCAAATGG-ATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATAC 53552 ||| | || ||| ||| | ||||| ||| || | ||||| || || || | Sbjct 253742 GAGTCATACGGCATA--CGAAGCATCATAAAGCAGTCCGCGAGCCCTTGGACGCCGATTC 253799 Query 53553 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 53612 | | || | |||||| ||| || ||| | |||||| | | ||| || || | Sbjct 253800 CCAACGGACGATGTCTTAGATTTGAATTTTTACATTCTGGGAGGGAATAGTACCCAAAGT 253859 Query 53613 CTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT 53672 | | | |||||| | || || ||| || || || ||||| | ||| ||||| Sbjct 253860 CAACTACTTTATTTAAATTCCTCGTAATCACCTTCGTAACTTCCTTTAACTTGTCAAAAT 253919 Query 53673 CAAA----TTGTCCATCTATTACAAACATGTTC---AATGCAATAGATGCCAGATTACAA 53725 ||| |||| |||| | ||| | ||| || | |||||||||||||||||| Sbjct 253920 TAAATGTTTTGT-TATCTTTATCAACGAACTTCGGTAACCCGATAGATGCCAGATTACAA 253978 Query 53726 ACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTG 53785 || || | |||| || | |||| ||||| || ||||| | ||||| | Sbjct 253979 ACTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTACTTGAGACA 254038 Query 53786 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 53845 || ||||| ||||| | ||| ||||| || | || |||||||||||| ||| ||| Sbjct 254039 ATAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCAGCATCCTTATAACAAATAAAT 254098 Query 53846 GGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATT 53905 ||||| || |||||||| || | | | || ||| | | || || || Sbjct 254099 GGCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAACCAAAGTTTTTGCGCTTTCATG 254158 Query 53906 ATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTC--AAACTCGTCTC 53963 | | | | | || | |||||||| | |||||| ||| |||||| || | Sbjct 254159 GTCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGTACAAT--TTCCTAAACTCATCAC 254216 Query 53964 CCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 54023 ||||||||| | |||||| || || ||||| |||||||| | ||| ||| | || Sbjct 254217 CCCAAACATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTCCAATCT---TGAT 254273 Query 54024 CCTT---CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 54080 |||| || | | |||||| |||||||||| |||||| || ||| || || | Sbjct 254274 CCTTTTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGAC 254333 Query 54081 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 54140 ||| || || ||||| || ||| ||| || | ||| | | || || ||| Sbjct 254334 ATCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAAAT 254393 Query 54141 GCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 54200 |||| |||||||| || || | ||| | || ||||| || || ||||| || | Sbjct 254394 GCCATGGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATAT 254453 Query 54201 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGG 54260 | ||||| || | ||||||||| | || ||||||||| | ||||| || ||||||| Sbjct 254454 ACCTAGCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTGG 254513 Query 54261 TCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTG 54320 | || ||||| ||| | | | ||||||||| | || | || | || |||| Sbjct 254514 TTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCTG 254573 Query 54321 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 54380 | | || || ||| ||| ||| ||| ||| | || || | ||| || | Sbjct 254574 CAGTCTTGCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCTT 254633 Query 54381 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 54440 | || | || | ||| || |||||||| | || ||||| | ||| || | Sbjct 254634 CTGGAATTCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAAA 254693 Query 54441 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTG 54500 ||||| | ||| || ||||| |||||| || | || | ||| ||||| | ||| | Sbjct 254694 GTGTAGGTGTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTCAAGAGCAG 254753 Query 54501 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 54560 || ||||| | ||| || || | || ||||||| | ||||| ||||||| Sbjct 254754 CTTCAATATCACCACAATGTATACCACAAGAAACTCGCATTAGAAGATGCTGTGGTCTTT 254813 Query 54561 CAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 54620 | || | ||||| | ||| | || | |||||| |||| | ||| || || |||||| Sbjct 254814 CCACAACTTTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGTCTTGAAGGCAAAAT 254873 Query 54621 A 54621 | Sbjct 254874 A 254874 >seq223 Length=111419 Score = 221 bits (244), Expect = 1e-52 Identities = 578/868 (67%), Gaps = 23/868 (3%) Strand=Plus/Plus Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904 |||||||||| || || | |||||||| ||||| |||||||||| | ||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 23905 CCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCA 23964 |||| |||| | |||||||| |||||||| ||| | | | || || ||| | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974 Query 23965 ATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 24024 |||||| || ||||| || |||||| ||| | | ||||||| || ||||| | Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034 Query 24025 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 24084 ||| ||||||| || ||| || | | ||||| | || || |||| || || Sbjct 59035 CAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATTT 59094 Query 24085 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATG---TTTAAACATCAAACATGCGA 24141 | |||| | | | ||| | | ||| | | |||| | || || || || | Sbjct 59095 GTTGTACTCTAGA---AGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGCAA 59151 Query 24142 AATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 |||| ||| ||||| || || || | || || | |||||| ||||| |||||||| ||| Sbjct 59152 AATCAGCA-TGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGGC 59210 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCC 24259 || || ||||| |||||||||||||| || | | |||| | | |||||||| || ||||| Sbjct 59211 ATAAGTCCACGTTTTTTAAGCCAAAAAATAG-CACAAAAGCTACCAGAAAATAAGATTCC 59269 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC---ATGTATCCA 24316 ||| ||||| || |||||| ||| || || || | || || || ||||| Sbjct 59270 TTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTATCACAATTCATCCA 59326 Query 24317 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 || ||||| || ||||| ||||| || | || || || | ||| || Sbjct 59327 TTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAAG 59386 Query 24377 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCC 24434 | ||| ||| | || ||| |||| ||||||| | || || ||| | || Sbjct 59387 CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGA--ATATGTCTCA 59444 Query 24435 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCTG 24493 ||| || | |||||| ||||||||||| | || | ||| |||||| || | || || Sbjct 59445 TTATGTATTTGTTCAATAGCCATTTGAAAAGCATA-ATACATTCTAGCTTCTGGTATTTG 59503 Query 24494 TACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 24553 || |||| || ||| | | || || ||||| | || || || ||||| || ||||| Sbjct 59504 TATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAA 59563 Query 24554 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 24613 ||| || | |||| ||| ||||| | | |||| | | || | | |||||| | Sbjct 59564 AAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAATCTCT 59623 Query 24614 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 24673 | ||||| | || ||| | |||||| |||||||||||| || || |||||||| Sbjct 59624 GGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATA 59683 Query 24674 CATATTCCAGATGTCATGATATTGAATT 24701 ||| ||| || || | | ||| |||| Sbjct 59684 CATTGACCAAATATCTTCA-ATTAAATT 59710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593715269443440