Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq849 136 6e-27 seq445 107 3e-18 >seq849 Length=33325 Score = 136 bits (150), Expect = 6e-27 Identities = 176/240 (73%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 124533 AATACAA---TGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATT 124589 ||||||| |||| || ||| | ||||| | ||||| || ||||| || | || | Sbjct 19860 AATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACATTGGAAGTA 19801 Query 124590 GAAGCAAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACC 124648 || | ||||||||| ||| ||||| || || ||||||||||| ||||| || || Sbjct 19800 GAGCCTTCAGATACAATTGAGAATGTTAAAGCA-AAGATTCAAGATAAGGAAGGAATTCC 19742 Query 124649 ACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGA 124708 ||||||||||||| | | || ||||| || |||||||||||||| | |||| | Sbjct 19741 ACCTGATCAACAACGTTTGATCTTTGCGGGGAAACAATTAGAGGACGGAAGAACTCTCTC 19682 Query 124709 AGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| ||||| ||||| ||||| |||||||| || | | |||||||||| Sbjct 19681 TGATTACAATATCCAAAAGGAATCCACTTTACATTTGGTATTGAGACTCAGAGGTGGTAT 19622 Score = 125 bits (138), Expect = 1e-23 Identities = 173/238 (73%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || || || |||||||| | || | || | Sbjct 19395 ATGCAGATTTTTGTTAAAACTTTGACGGGAAAGACTATAACATTGGAAGTAGAGCCTTCA 19336 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| ||| ||||| || || |||||||| || ||||| || ||||| || || Sbjct 19335 GATACAATCGAGAATGTTAAAGCA-AAGATTCAAGACAAGGAAGGAATTCCACCCGACCA 19277 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||||||||||||||||||||| | |||| | ||||| || Sbjct 19276 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAA 19217 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAA 124774 ||| ||||||||||| ||||| |||||||| || | | ||||||| || |||||| Sbjct 19216 TATCCAAAAAGAATCCACTTTACATTTGGTATTGAGACTTAGAGGTGGAATGTAAAAA 19159 >seq445 Length=134117 Score = 107 bits (118), Expect = 3e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || ||||||| || || || || | || |||| | Sbjct 79220 ATGCAAATTTTTGTAAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCC 79279 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| |||| || || || || || ||||| || || ||||||||||| Sbjct 79280 GACACCATTGAGAATGTTAAGGCA-AAGATCCAGGACAAAGAGGGCATTCCACCTGATCA 79338 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || ||||||||||| ||||| || ||| | |||| ||| || || || Sbjct 79339 ACAGCGTCTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTTTATCTGACTACAA 79398 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 |||||| || || || || || |||||||| | | | |||||||| ||| Sbjct 79399 TATTCAGAAGGAGTCTACCTTACATTTGGTGCTGAGACTTAGAGGTGGTGTTA 79451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755447944950400