Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq849 136 6e-27
seq445 107 3e-18
>seq849
Length=33325
Score = 136 bits (150), Expect = 6e-27
Identities = 176/240 (73%), Gaps = 5/240 (2%)
Strand=Plus/Minus
Query 124533 AATACAA---TGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATT 124589
||||||| |||| || ||| | ||||| | ||||| || ||||| || | || |
Sbjct 19860 AATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACATTGGAAGTA 19801
Query 124590 GAAGCAAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACC 124648
|| | ||||||||| ||| ||||| || || ||||||||||| ||||| || ||
Sbjct 19800 GAGCCTTCAGATACAATTGAGAATGTTAAAGCA-AAGATTCAAGATAAGGAAGGAATTCC 19742
Query 124649 ACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGA 124708
||||||||||||| | | || ||||| || |||||||||||||| | |||| |
Sbjct 19741 ACCTGATCAACAACGTTTGATCTTTGCGGGGAAACAATTAGAGGACGGAAGAACTCTCTC 19682
Query 124709 AGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||| ||||| ||||| ||||| ||||| |||||||| || | | ||||||||||
Sbjct 19681 TGATTACAATATCCAAAAGGAATCCACTTTACATTTGGTATTGAGACTCAGAGGTGGTAT 19622
Score = 125 bits (138), Expect = 1e-23
Identities = 173/238 (73%), Gaps = 3/238 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || | || || || |||||||| | || | || |
Sbjct 19395 ATGCAGATTTTTGTTAAAACTTTGACGGGAAAGACTATAACATTGGAAGTAGAGCCTTCA 19336
Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||||| ||| ||||| || || |||||||| || ||||| || ||||| || ||
Sbjct 19335 GATACAATCGAGAATGTTAAAGCA-AAGATTCAAGACAAGGAAGGAATTCCACCCGACCA 19277
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|||| | | || ||||||||||||||||||||||| | |||| | ||||| ||
Sbjct 19276 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAA 19217
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAA 124774
||| ||||||||||| ||||| |||||||| || | | ||||||| || ||||||
Sbjct 19216 TATCCAAAAAGAATCCACTTTACATTTGGTATTGAGACTTAGAGGTGGAATGTAAAAA 19159
>seq445
Length=134117
Score = 107 bits (118), Expect = 3e-18
Identities = 165/233 (71%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| |||| || ||||||| || || || || | || |||| |
Sbjct 79220 ATGCAAATTTTTGTAAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCC 79279
Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || ||| ||| |||| || || || || || ||||| || || |||||||||||
Sbjct 79280 GACACCATTGAGAATGTTAAGGCA-AAGATCCAGGACAAAGAGGGCATTCCACCTGATCA 79338
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| | || || ||||||||||| ||||| || ||| | |||| ||| || || ||
Sbjct 79339 ACAGCGTCTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTTTATCTGACTACAA 79398
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770
|||||| || || || || || |||||||| | | | |||||||| |||
Sbjct 79399 TATTCAGAAGGAGTCTACCTTACATTTGGTGCTGAGACTTAGAGGTGGTGTTA 79451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755447944950400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |