Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq849 102 7e-17 seq445 96.9 3e-15 >seq849 Length=33325 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 |||||| ||||| || | || || |||||||| || |||||||| | ||| | Sbjct 19180 TCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCC 19239 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||||| | |||||||| || |||| | ||| || || ||||| || || || ||||| Sbjct 19240 GTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTT 19299 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 |||| ||| ||| |||||| | |||| || || | ||| || || | || | Sbjct 19300 GTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTACTTCCAATGTTAT 19359 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || |||| |||||| |||||||||||||| Sbjct 19360 AGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 ||||| || ||||| | || || || ||||| || |||||||| | ||| | | Sbjct 19409 CTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGATAGAGTTCTTCCA 19468 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||| || || ||||| ||| |||| | ||| || || ||||| || || || |||||| Sbjct 19469 TCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTG 19528 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| ||| ||| |||||| | || | || || | ||| || || | || | Sbjct 19529 TCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATA 19588 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || |||| |||||| |||||||||||||| Sbjct 19589 GTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623 >seq445 Length=134117 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||| |||||| || | |||||||| || ||||| ||||| || | ||| | Sbjct 79435 TCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGATAAAGTTCTGCC 79376 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || | || ||||| || |||| |||||||| ||||| || || |||||||| || Sbjct 79375 ATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGAATGCCCTCTTT 79316 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 ||| || ||| ||||| | || | |||||| | ||| || || | || | Sbjct 79315 GTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACTTCCAATGTGAT 79256 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || | ||||||||||||||| ||||| Sbjct 79255 GGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCAT 79220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433825889926276