Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq849 102 7e-17
seq445 96.9 3e-15
>seq849
Length=33325
Score = 102 bits (112), Expect = 7e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582
|||||| ||||| || | || || |||||||| || |||||||| | ||| |
Sbjct 19180 TCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCC 19239
Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642
||||| | |||||||| || |||| | ||| || || ||||| || || || |||||
Sbjct 19240 GTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTT 19299
Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702
|||| ||| ||| |||||| | |||| || || | ||| || || | || |
Sbjct 19300 GTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTACTTCCAATGTTAT 19359
Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || |||| |||||| ||||||||||||||
Sbjct 19360 AGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583
||||| || ||||| | || || || ||||| || |||||||| | ||| | |
Sbjct 19409 CTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGATAGAGTTCTTCCA 19468
Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643
||||| || || ||||| ||| |||| | ||| || || ||||| || || || ||||||
Sbjct 19469 TCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTG 19528
Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703
||| ||| ||| |||||| | || | || || | ||| || || | || |
Sbjct 19529 TCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATA 19588
Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || |||| |||||| ||||||||||||||
Sbjct 19589 GTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623
>seq445
Length=134117
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582
||||| |||||| || | |||||||| || ||||| ||||| || | ||| |
Sbjct 79435 TCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGATAAAGTTCTGCC 79376
Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642
||| || | || ||||| || |||| |||||||| ||||| || || |||||||| ||
Sbjct 79375 ATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGAATGCCCTCTTT 79316
Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702
||| || ||| ||||| | || | |||||| | ||| || || | || |
Sbjct 79315 GTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACTTCCAATGTGAT 79256
Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || | ||||||||||||||| |||||
Sbjct 79255 GGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCAT 79220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433825889926276
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |