Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq223 262 4e-65 >seq223 Length=111419 Score = 262 bits (290), Expect = 4e-65 Identities = 580/858 (68%), Gaps = 19/858 (2%) Strand=Plus/Plus Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||| ||||| | |||||||||||| |||||||||||||| |||| | ||||||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG--CATCCCAATTCCAACAA 16062 |||| ||||||||||||| | | ||| ||||| | |||| || | || | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATA-TATTTTGGGGACATCTAAAG-CAAAAAG 58972 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC-AGTTCATTCCTATTA 16121 || |||||| || |||||||| ||||| || ||| || || | ||||| || || | Sbjct 58973 TAGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTGGAATTCATACCAATAA 59031 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 | |||||| | | || | || ||| |||| | || ||| ||||| ||| | Sbjct 59032 GATCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGA 59091 Query 16182 TATCTCTTACTACACTATTTAACGGAGGGTTTAAT--AAGTG-TTTAAACATTATACAAG 16238 | | | |||| | | || || | || ||| ||| | |||| | |||| |||| Sbjct 59092 TTTGTTGTACTCTAGAAGTT---GGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAG 59148 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 |||||||| ||| | |||||| || | || || | ||||||||||| || || || | Sbjct 59149 CAAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAG 59208 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 |||| ||||| |||||||||| |||||| ||||| ||| ||||||||| || || | Sbjct 59209 GCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGATTC 59268 Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcc 16418 |||||||||| ||| ||| | || |||| | | | |||| | || | |||| Sbjct 59269 CTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTA---TCACAATTCATCC 59325 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 |||| | ||||| | ||| |||| |||||| || | ||||| | || | Sbjct 59326 ATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAA--A 59383 Query 16479 AATAAttt--ttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536 || |||| |||||| | || |||||| |||| || ||||| ||| | || Sbjct 59384 AAGCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGAATATGTCTC 59443 Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG 16596 ||| || | || || || || |||||| ||||| | ||||||||| | |||||| Sbjct 59444 ATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTGGTATTTG 59503 Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 || ||| ||| || | || |||||||| |||| || ||||| || || ||||| Sbjct 59504 TATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAA 59563 Query 16657 AAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGA 16716 ||| || || | | ||| ||||| | | |||| |||| ||| || ||| || Sbjct 59564 AAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAATCTCT 59623 Query 16717 AAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 |||||| |||||| | ||||| | |||||| || || |||| |||||||| Sbjct 59624 GGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATA 59683 Query 16777 CATTTTCCATATGTCTTC 16794 |||| ||| || ||||| Sbjct 59684 CATTGACCAAATATCTTC 59701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462507068465800