Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq223 230 2e-55
>seq223
Length=111419
Score = 230 bits (254), Expect = 2e-55
Identities = 582/870 (67%), Gaps = 45/870 (5%)
Strand=Plus/Plus
Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973
|||| ||||| | |||||| ||||| ||||| || |||||||||| ||||| ||| |
Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914
Query 13974 CCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGT 14032
|||| ||||||| ||||| || ||||| | | | ||| | ||| | || |||
Sbjct 58915 CCATCCAATCAAAAGGATTGGT-GACATTATATATTTTGGGGACATCTAAAGCAAAAAGT 58973
Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 14091
| |||||| || | || ||||||||||||| ||| || || |||||||||| || ||
Sbjct 58974 AGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTGGAATTCATACCAATAAG 59032
Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151
| ||||||| || | || | | |||| | | ||||| || || ||
Sbjct 59033 ATCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGAT 59092
Query 14152 AATCGTAATAATTTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACA 14205
| || || | | ||||| || | |||| || |||| | ||||| ||
Sbjct 59093 --TTGTTGTACTCT----AGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCA 59146
Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265
||||||||| ||| || || ||||| | || ||||||||||||||||| || | |||
Sbjct 59147 AGCAAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCC 59206
Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATA 14324
||||| | ||| |||||||| | |||||| || ||| | || | | || ||||| || |
Sbjct 59207 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCA-CAAAAGCTACCAGAAAATAAGA 59265
Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14384
|||| ||||||||| || | || | || || |||| ||| | ||| |
Sbjct 59266 TTCCTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTATCACAATTC---A 59322
Query 14385 TCCATTTTCTAGCCCATTCAGAtttttttttAA----TAAAAT-----CCATTGTTTC-A 14434
||||||| | ||||| || | |||||||||| | |||| |||| ||| |
Sbjct 59323 TCCATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAA 59382
Query 14435 ATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 14494
| ||||| | | |||| || || ||| ||| ||| ||||||| |||||
Sbjct 59383 AAAGCAT----TTGACGTTCTTTAATTTCAGT------AATATATCTATCAATGAGTAAT 59432
Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554
||| | ||| ||||| | ||| ||||| || |||||| ||||| | |||||||
Sbjct 59433 GAATATGTCTCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCT 59492
Query 14555 TCTGACCATTGTA--CCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14612
|||| ||||| |||| || ||||| || | ||||| ||||| |||| |||||||
Sbjct 59493 TCTGGTATTTGTATTTCTCTAAG-AAAAT-TTACCGCCAAGTTTTCCATAACAATACCAT 59550
Query 14613 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTT 14672
|||| || |||||||| || | | | ||| ||||||| | || || | ||
Sbjct 59551 CACTTGCAGCAAAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGAC 59610
Query 14673 TTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAA 14732
||| |||||| |||| | | | ||| | ||| ||| |||||| ||
Sbjct 59611 TTTCCCAATCTCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTT 59670
Query 14733 CAGCTTTTTTATACATTACCCATATTTCTT 14762
||||||||||||||||| ||| || ||||
Sbjct 59671 CAGCTTTTTTATACATTGACCAAATATCTT 59700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482340456990040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |