Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq223 230 2e-55 >seq223 Length=111419 Score = 230 bits (254), Expect = 2e-55 Identities = 582/870 (67%), Gaps = 45/870 (5%) Strand=Plus/Plus Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 |||| ||||| | |||||| ||||| ||||| || |||||||||| ||||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 13974 CCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGT 14032 |||| ||||||| ||||| || ||||| | | | ||| | ||| | || ||| Sbjct 58915 CCATCCAATCAAAAGGATTGGT-GACATTATATATTTTGGGGACATCTAAAGCAAAAAGT 58973 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 14091 | |||||| || | || ||||||||||||| ||| || || |||||||||| || || Sbjct 58974 AGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTGGAATTCATACCAATAAG 59032 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 | ||||||| || | || | | |||| | | ||||| || || || Sbjct 59033 ATCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGAT 59092 Query 14152 AATCGTAATAATTTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACA 14205 | || || | | ||||| || | |||| || |||| | ||||| || Sbjct 59093 --TTGTTGTACTCT----AGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCA 59146 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 ||||||||| ||| || || ||||| | || ||||||||||||||||| || | ||| Sbjct 59147 AGCAAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCC 59206 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATA 14324 ||||| | ||| |||||||| | |||||| || ||| | || | | || ||||| || | Sbjct 59207 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCA-CAAAAGCTACCAGAAAATAAGA 59265 Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14384 |||| ||||||||| || | || | || || |||| ||| | ||| | Sbjct 59266 TTCCTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTATCACAATTC---A 59322 Query 14385 TCCATTTTCTAGCCCATTCAGAtttttttttAA----TAAAAT-----CCATTGTTTC-A 14434 ||||||| | ||||| || | |||||||||| | |||| |||| ||| | Sbjct 59323 TCCATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAA 59382 Query 14435 ATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 14494 | ||||| | | |||| || || ||| ||| ||| ||||||| ||||| Sbjct 59383 AAAGCAT----TTGACGTTCTTTAATTTCAGT------AATATATCTATCAATGAGTAAT 59432 Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 ||| | ||| ||||| | ||| ||||| || |||||| ||||| | ||||||| Sbjct 59433 GAATATGTCTCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCT 59492 Query 14555 TCTGACCATTGTA--CCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14612 |||| ||||| |||| || ||||| || | ||||| ||||| |||| ||||||| Sbjct 59493 TCTGGTATTTGTATTTCTCTAAG-AAAAT-TTACCGCCAAGTTTTCCATAACAATACCAT 59550 Query 14613 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTT 14672 |||| || |||||||| || | | | ||| ||||||| | || || | || Sbjct 59551 CACTTGCAGCAAAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGAC 59610 Query 14673 TTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAA 14732 ||| |||||| |||| | | | ||| | ||| ||| |||||| || Sbjct 59611 TTTCCCAATCTCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTT 59670 Query 14733 CAGCTTTTTTATACATTACCCATATTTCTT 14762 ||||||||||||||||| ||| || |||| Sbjct 59671 CAGCTTTTTTATACATTGACCAAATATCTT 59700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482340456990040