Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq38 84.2 3e-11 >seq38 Length=21219 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/145 (74%), Gaps = 7/145 (5%) Strand=Plus/Minus Query 73941 CTAGTGCTA---AATAGACAACCTACTTTACATAAAGCATCA--ATGATGGCTCTTCGAG 73995 |||||||| || ||||| |||| ||||||||| || | || |||| || ||| | Sbjct 3815 CTAGTGCTCTTTAACAGACAGCCTAGTTTACATAAG--ATGAGTATTATGGGTCATCGTG 3758 Query 73996 TTAAAATTATGGATGTAAAAACCTTTAAATTTAATCTTGCATGCACTAAACCATATAATG 74055 | |||||| || | || |||| | |||| ||| || ||| ||||||||||| Sbjct 3757 TAAAAATTTTGCCTTATTCCACATTTAGACTTAACCTTTCAGTAACTTCACCATATAATG 3698 Query 74056 CAGATTTTGATGGAGATGAAATGAA 74080 |||| |||||||||||||||||||| Sbjct 3697 CAGACTTTGATGGAGATGAAATGAA 3673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679807151478960