Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq445 87.8 1e-12
seq849 84.2 2e-11
>seq445
Length=134117
Score = 87.8 bits (96), Expect = 1e-12
Identities = 152/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167
||||| || |||| || | || || || || ||||| |||||||| | | ||| |
Sbjct 79437 AGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGATAAAGTTCTG 79378
Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227
| |||||||||||| || || ||| |||| || | |||||||| || | ||| ||
Sbjct 79377 CCATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGAATGCCCTCT 79318
Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287
|| || || | | ||| || | ||| ||||| ||||| ||| | |||
Sbjct 79317 TTGTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACTTCCAATGTG 79258
Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
||| | || || || || |||||||||||||||||||| ||
Sbjct 79257 ATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATCTT 79217
>seq849
Length=33325
Score = 84.2 bits (92), Expect = 2e-11
Identities = 161/233 (69%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 18108 AGTCTAAGTACCA--TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTT 18165
||||| | ||||| ||| ||||| ||||| ||||| || ||||| || | | |||
Sbjct 19634 AGTCTCAATACCAAATGTAAAGTG--GATTCCTTTTGGATATTGTAATCAGAGAGAGTTC 19691
Query 18166 TACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTT 18225
| | || || |||||||| |||||| |||| | | ||||||||| || | ||||
Sbjct 19692 TTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTT 19751
Query 18226 CCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATG 18284
||||||| ||| | |||| || || | ||| || || ||||| ||| |
Sbjct 19752 CCTTATCTTGAATCT-TTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAAT 19810
Query 18285 GTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACTCTT 18337
||||| | || || ||||| || || |||||||| ||||| ||| | ||||
Sbjct 19811 GTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTGTATTCTT 19863
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379340056363485
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |