Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq223 120 3e-22 seq445 91.5 1e-13 seq849 89.7 5e-13 >seq223 Length=111419 Score = 120 bits (132), Expect = 3e-22 Identities = 373/571 (65%), Gaps = 11/571 (2%) Strand=Plus/Minus Query 57566 AGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625 ||| |||||| ||||| ||||| || |||||||| |||||| |||||| | || Sbjct 59699 AGATATTTGGTCAATGTATAAAAAAGCTGAAGCATCATTTTGGGTTACTGAAGAAATTGA 59640 Query 57626 CCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 | | | ||| || |||||||| || ||||| |||| ||| | ||||| || Sbjct 59639 TTTAAGTCAAGATTCCAGAGATTGGGAAAGTCTTAAAGATCCTGAAAGACACTTTATCAA 59580 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 | | || | || ||||| || ||| ||||||||||||| || || |||| || | Sbjct 59579 ATATGTTCTAGCCTTTTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTGG-CGGTAA 59521 Query 57746 ATTTTCACA-AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||||| | |||| | ||| | | || || ||| | ||| | |||||| |||| | Sbjct 59520 ATTTTCTTAGAGAAATACAAATACCAGAAGCTAGAATGTATTATGCTTTTCAAATGGCTA 59461 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 ||||| | | ||| || | ||||| ||||||| |||| || | | || || Sbjct 59460 TTGAACAAATACATAATGAGACATATTCATTACTCATTGATAGATATATTACTGA-AATT 59402 Query 57865 ACGAGAAACGT---AGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGG 57921 | | ||||| | || || | || ||| || | || | || |||| Sbjct 59401 A--AAGAACGTCAAATGCTTTTTGAAGCAATCTCTCATATTTCAGCAGTTAAAAAAAAGG 59344 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 |||||||| ||| |||||||| || | | | | || || ||||| | || | Sbjct 59343 CAGAGTGGGCAACTAAATGGATGAATTGTGATA---GATCTTTTGCTGAGAGAATTATTG 59287 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 ||| || || ||||| || || ||||| || |||||| || || |||||| | | Sbjct 59286 GATTCTGTGCAGTTGAAGGAATCTTATTTTCTGGTAGCTTTTGTGCTATTTTTTGGCTTA 59227 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 | ||||| || || ||||| || || || ||| ||||| | || || || || | Sbjct 59226 AAAAACGTGGACTTATGCCTGGACTCACCTTTTCAAACGAACTTATCAGCCGTGATGAAG 59167 Query 58102 GTCTCCATACTGATTTTGCGTGCCTAATGTA 58132 | || ||| |||||||||| ||| |||| || Sbjct 59166 GACTACATGCTGATTTTGCTTGCTTAATCTA 59136 >seq445 Length=134117 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||| ||||| ||| | ||||| || || ||||| | || ||||| || Sbjct 79217 AAGATGCAAATTTTTGTAAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCT 79276 Query 31250 TCCGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| | || || | | | || || || |||||| || ||| | || || || Sbjct 79277 TCCGACACCATTGAGAATGTTAAGGCAAAG-ATCCAGGACAAAGAGGGCATTCCACCTGA 79335 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || |||||||| || || || || || || |||||||| | ||| | || || Sbjct 79336 TCAACAGCGTCTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTTTATCTGACTA 79395 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||| || || || || | ||| |||| || ||||| || || ||| Sbjct 79396 CAATATTCAGAAGGAGTCTACCTTACATTTGGTGCTGAGACTTAGAGGTGGT 79447 >seq849 Length=33325 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || ||| |||| || || || || || | || || || || || Sbjct 19395 ATGCAGATTTTTGTTAAAACTTTGACGGGAAAGACTATAACATTGGAAGTAGAGCCTTCA 19336 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | || ||| || ||| | | |||||||||| | || |||||||| Sbjct 19335 GATACAATCGAGAATGTTAAAGCAAAGATTCAAG-ACAAGGAAGGAATTCCACCCGACCA 19277 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||| | || || || || ||||| || || ||| | ||| | ||||| || Sbjct 19276 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAA 19217 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||||||||| ||| | ||| ||||| | ||||| || || || Sbjct 19216 TATCCAAAAAGAATCCACTTTACATTTGGTATTGAGACTTAGAGGTGG 19169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761647015760