Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq290 288 1e-72 seq223 192 7e-44 >seq290 Length=478353 Score = 288 bits (318), Expect = 1e-72 Identities = 1153/1803 (64%), Gaps = 42/1803 (2%) Strand=Plus/Plus Query 62084 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62143 ||| || || || ||||||| ||| |||| || ||||||||||| | || || Sbjct 253087 ATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTT 253146 Query 62144 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62203 | | | | | || | | ||||| ||||||| ||| ||| ||| | | | || Sbjct 253147 TGCAAAGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGACC 253206 Query 62204 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA- 62262 ||| ||||||||||| | || | ||||||||| ||||||||||| ||| ||||||| Sbjct 253207 CCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 253266 Query 62263 CTCGCTTAATATCTTCTGGAA-GGTTTGTA--TTCTGAATGGATCCACCATCTACCATAA 62319 ||| | | ||||||||||||| || ||| || ||||| |||| || | | || | Sbjct 253267 CTCACGT-ATATCTTCTGGAATTGTAGGTATGTTTTGAATACTTCCATTATTTGCAATTA 253325 Query 62320 TCCTATTCTTGATCTCATCATTCCATAAT----TTTCTCTCGGTTAAAACTCTAAGGAGA 62375 | | | ||| | | ||||| ||||||| |||| | ||| | | || | | Sbjct 253326 TATTTTGCTTAAGCCTATCATCCCATAATCCAAGTTCTAAC----AAATCATTTAGTAAA 253381 Query 62376 TGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 62435 || ||||| ||||| |||||| ||||| | || || ||| |||||||| ||| Sbjct 253382 TGTGGGTTCACTACAAAGAATTCACCAGATAGCACCCTACGATGATAAATATTTGAAGTA 253441 Query 62436 TACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 62495 | || || | |||||| || || ||||| || | ||| || ||||| ||||| || Sbjct 253442 AAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCATTGGA 253501 Query 62496 GCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAA 62555 | | || | | ||| | || || || | |||| | ||||| || ||||| Sbjct 253502 GATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAATCCCAG 253561 Query 62556 TTCCAAAGATCCGA---CGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTG 62612 | ||||| | || ||| ||| | |||| | ||||| ||||| Sbjct 253562 TCACAAAGCCCAGAATCTGGTGTAACTCCCCACATATCAAATTGCAAGATACCTTTACTC 253621 Query 62613 GCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCC 62672 || ||||| ||||| || ||||| || || || || || || | ||| || ||| Sbjct 253622 GCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGCTAGCC 253681 Query 62673 TCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCT---TCC 62729 || | || ||||||| || |||||| || | ||||| || | || ||| || Sbjct 253682 TCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTTTATCT 253741 Query 62730 GGGCTATCAAATGG-ATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAA 62787 | | ||| | || ||| ||| | ||||| |||||| | ||||| || || | Sbjct 253742 GAG---TCATACGGCATA--CGAAGCATCATAAAGCAGTCCGCGAGCCCTTGGACGCCGA 253796 Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 | || | || | |||||| ||| || ||| | |||||| | | ||| || || Sbjct 253797 TTCCCAACGGACGATGTCTTAGATTTGAATTTTTACATTCTGGGAGGGAATAGTACCCAA 253856 Query 62848 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907 || | | |||||| | ||| || ||| || || || ||||| | ||| || Sbjct 253857 AGTCAACTACTTTATTTAAATTCCTCGTAATCACCTTCGTAACTTCCTTTAACTTGTCAA 253916 Query 62908 AATCAAA---TCGCCCATCTATTACAAACATGTTC---AATGCAACAGATGCCAGATTAC 62961 ||| ||| | |||| | ||| | ||| || | | |||||||||||||| Sbjct 253917 AATTAAATGTTTTGTTATCTTTATCAACGAACTTCGGTAACCCGATAGATGCCAGATTAC 253976 Query 62962 ACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 63021 | || || | |||| || | |||| ||||| || ||||| | ||||| | Sbjct 253977 AAACTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTACTTGAGA 254036 Query 63022 TGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGA 63081 |||||||| ||||| | ||| ||||| || | || |||||||||||| ||| | Sbjct 254037 CAATAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCAGCATCCTTATAACAAATAA 254096 Query 63082 ATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 63141 |||| || || |||||||| |||| | | || ||| | | | || || | Sbjct 254097 ATGGCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAACCAAAGTTTTTGCGCTTTCA 254156 Query 63142 TTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTC--GAACTCGTC 63199 | | | | | || || | |||||||| |||||| ||| ||||| || Sbjct 254157 TGGTCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGTACAAT--TTCCTAAACTCATC 254214 Query 63200 TCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63259 |||||||||| | ||||| || || ||||| |||||||| | ||| ||| | Sbjct 254215 ACCCCAAACATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTCCAATCT---TG 254271 Query 63260 ATCCTT---CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 63316 |||||| || | | |||||| |||||||||| |||||| || ||| || || | Sbjct 254272 ATCCTTTTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACG 254331 Query 63317 TGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 63376 ||| || || ||||| || ||| ||| || | ||| | | || || | Sbjct 254332 ACATCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAA 254391 Query 63377 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 63436 |||||| |||||||| || || || ||| | || ||||| || || ||||| || Sbjct 254392 ATGCCATGGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAAT 254451 Query 63437 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATT 63496 || ||||| || | ||||||||| | || ||||||||| | || || || | ||||| Sbjct 254452 ATACCTAGCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATT 254511 Query 63497 GGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCC 63556 ||| || ||||| ||| | | | ||||||||| | || | || | || || Sbjct 254512 GGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACC 254571 Query 63557 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATC 63616 ||| | || || ||| ||| ||| ||||||| | || || | ||| || Sbjct 254572 TGCAGTCTTGCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTC 254631 Query 63617 ATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAA 63676 || || | || | ||| || |||||||| | || | ||||| | ||| || Sbjct 254632 TTCTGGAATTCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAA 254691 Query 63677 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63736 | ||||| | ||| || ||||| |||||| || | || | ||| ||||||| ||| Sbjct 254692 AAGTGTAGGTGTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTCAAGAGC 254751 Query 63737 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63796 | || ||||| | ||| || || | || ||||||| | ||||| ||||| Sbjct 254752 AGCTTCAATATCACCACAATGTATACCACAAGAAACTCGCATTAGAAGATGCTGTGGTCT 254811 Query 63797 TTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63856 ||| |||| |||||| | ||| | | | |||||| |||| | ||| || || |||| Sbjct 254812 TTCCACAACTTTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGTCTTGAAGGCAAA 254871 Query 63857 ATA 63859 ||| Sbjct 254872 ATA 254874 >seq223 Length=111419 Score = 192 bits (212), Expect = 7e-44 Identities = 557/844 (66%), Gaps = 24/844 (3%) Strand=Plus/Plus Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 |||||||||| || || | |||||||| ||||| ||||| |||| | ||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 33352 CCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCA 33411 |||| ||||||| |||||||| ||||| || ||||| | | || || ||| | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974 Query 33412 ATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 33471 |||||| || || ||||| |||||| ||| | | ||||||| || || || | Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034 Query 33472 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAA 33531 ||| ||||||| || ||| || | | ||||| || || | || || || Sbjct 59035 CAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATTT 59094 Query 33532 ATCTAACGGTTTCTTCAC-TCGGTGGATGTAATAAATG---TTTAAACATCAAACATGCG 33587 | || ||| | | ||| | | ||| | | |||| | || || || || Sbjct 59095 GTTGTAC----TCTAGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGCA 59150 Query 33588 AAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 ||||| ||| || || || || || | || || | |||||| ||||| |||||||| || Sbjct 59151 AAATCAGCA-TGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGG 59209 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCGGAAAAGAAGATTC 33705 ||| || ||||| |||||||||||||| || | | | || | | || ||||| ||||||| Sbjct 59210 CATAAGTCCACGTTTTTTAAGCCAAAAAATAGCA-CAAAAGCTACCAGAAAATAAGATTC 59268 Query 33706 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC---ATGTATCC 33762 |||| |||||| || |||||| |||||| || || | || || || |||| Sbjct 59269 CTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTATCACAATTCATCC 59325 Query 33763 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33822 | || ||||| || ||||| ||||| || | || || || | ||| | Sbjct 59326 ATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAA 59385 Query 33823 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTC 33880 | | ||| ||| | || ||| ||| |||| || | || || ||| | || Sbjct 59386 GCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGA--ATATGTCTC 59443 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCT 33939 ||| || | |||||| ||||| ||||| | || | ||| |||||| || | || | Sbjct 59444 ATTATGTATTTGTTCAATAGCCATTTGAAAAGCATA-ATACATTCTAGCTTCTGGTATTT 59502 Query 33940 GCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAA 33999 | | |||| || ||| | | || || ||||| | || || |||||||| || |||| Sbjct 59503 GTATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAA 59562 Query 34000 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 34059 |||| || | |||| ||| ||||| | | |||| | | || | | |||||| Sbjct 59563 AAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAATCTC 59622 Query 34060 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 34119 || ||||| | || ||| | |||||| |||||||||||| || || ||||||| Sbjct 59623 TGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTAT 59682 Query 34120 ACAT 34123 |||| Sbjct 59683 ACAT 59686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810884569840