Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq290 306 3e-78 seq223 185 8e-42 >seq290 Length=478353 Score = 306 bits (338), Expect = 3e-78 Identities = 1198/1860 (64%), Gaps = 54/1860 (3%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || |||| |||||| || ||| || ||||||| |||||| || || ||| Sbjct 253043 TCTACAGTAAATTGTATAGGGCGTGTTGCGCTTTGAGTTCTCAAATAATAAATGCCGGTT 253102 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| || | |||| || ||||||||||| | | ||||| | | | ||| Sbjct 253103 TTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTTTGCAAAGTTGGCATTT 253162 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 || |||| || ||| || ||| ||| | | | | ||| || || || ||||| Sbjct 253163 TCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGACCCCTATCTGCAGCCATA 253222 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 || | | ||||| || |||||||| || ||||| | | ||||| ||| Sbjct 253223 TCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAGCTCACGTATATCTTCT 253282 Query 37030 GGTAAATCTAA--ATGTT--GAATAGAACCATTATGTAACACAATTGTATTCT--TTATG 37083 || || | || ||||| ||||| ||||||| | ||||| |||| | ||| | Sbjct 253283 GG-AATTGTAGGTATGTTTTGAATACTTCCATTATTTG---CAATTATATTTTGCTTAAG 253338 Query 37084 TCATTATTCCACATATTTCTACTTATTAGTTCTC--TCAATAGGTGTGGATTTACAACCT 37141 | | ||| |||| | | | || | | || | | || ||||| || || || Sbjct 253339 CCTATCATCC-CATAATCCAAGTTCTAACAAATCATTTAGTAAATGTGGGTTCACTACAA 253397 Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201 || || ||||||| || || | ||| ||||| |||| | || |||| || Sbjct 253398 AGAATTCACCAGATAGCACCCTACGATGATAAATATTTGAAGTAAAGGGCTCAAAACTCT 253457 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 |||| |||| ||| || || || ||||| |||||||||||||| | ||||| || || Sbjct 253458 CATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCATTGGAGATATTAAGAGAGAAT 253517 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATA------AAT 37315 | | | |||| || ||||| | ||| ||| || ||| || || | ||| Sbjct 253518 TACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAATCCCAGTCACAAAGCCCAGAAT 253577 Query 37316 CTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGT 37375 ||| || | | |||||||||| |||| | |||||||||||||| || || | Sbjct 253578 CTGGTG---TAACTCCCCACATATCAAATTGCAAGATACCTTTACTCGCAGGTGATCCAG 253634 Query 37376 TATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCAT 37435 ||||| ||| || || || | ||| || || || || |||| || || || || | Sbjct 253635 AATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGCTAGCCTCAAGAGCTGCGT 253694 Query 37436 AATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATG-CA 37494 |||| || ||| ||||||| | |||| | |||| |||| || || | | || Sbjct 253695 AATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTTTATCTGAGTCATACGGCA 253754 Query 37495 TAGCCCAATAAT-ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATG 37553 || | || || ||||| || || | || || || ||||| || | || | ||| Sbjct 253755 TA--CGAAGCATCATAAAGCAGTCCGCGAGCCCTTGGACGCCGATTCCCAACGGACGATG 253812 Query 37554 TTTCTTATTAGA-TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTAT 37612 | | ||| || | | || ||||| | | ||| || | || | || ||||| Sbjct 253813 TCTTAGATTTGAATTTTTAC-ATTCTGGGAGGGAATAGTACCCAAAGTCAACTACTTTAT 253871 Query 37613 TTAGATTTTTAACTAGTATT----TTCGTAATTATTCTCAACTTGTCGAACATAAATAC- 37667 ||| ||| || ||| | ||||||| | | |||||||| || ||||| Sbjct 253872 TTAAATTC----CTCGTAATCACCTTCGTAACTTCCTTTAACTTGTCAAAATTAAATGTT 253927 Query 37668 --GTTAT---TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACT 37722 ||||| ||| ||| || || ||| |||||| | |||||||| || |||| | Sbjct 253928 TTGTTATCTTTATCAACGAACTTCGGTAACCCGATAGATGCCAGATTACAAACTGCAATT 253987 Query 37723 TCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCC 37782 |||||| | || | ||| || || ||||| || | ||||| || ||| |||||| Sbjct 253988 TCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTACTTGAGACAATAGTTCCC 254047 Query 37783 AAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCT 37842 ||||| |||| || ||| |||| || ||| ||||| ||| | |||||||| Sbjct 254048 AAATTCTTTTGGTTACTTTTCCTATTTGCAGCATCCTTATAACAAATAAATGGCGTTCCC 254107 Query 37843 TGTTCTATTTGAGCCT-CGATAATAGATTTCCATAAACTTCTTGC--TTTAACGATCGCT 37899 ||| |||||||||| | ||| || | | ||| || |||| ||| | | || | Sbjct 254108 GTTTCAATTTGAGCCTGCAATATTAAAAACC---AAAGTTTTTGCGCTTTCATGGTCTTT 254164 Query 37900 TTA--AtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATA 37957 | | || ||| |||||||||| || ||||| |||| |||| ||||| | Sbjct 254165 CTCCCACGCCCTTGTTT--TTCGTATTCTTCGTACAATTTCCTAAACTCATCACCCCAAA 254222 Query 37958 CATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTA 38017 |||| |||||| || ||| || ||||| | | ||| |||| ||| ||||| | Sbjct 254223 CATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTCCAATCTTGATCCTTTTCAA 254282 Query 38018 CGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATT 38077 | | |||||||||| |||||| ||||| | |||| ||| | || ||| | Sbjct 254283 CCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGACATCTCATCT 254342 Query 38078 CTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTT 38137 |||| || || || ||||| | | ||| || | | || |||||||||| Sbjct 254343 CTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAAATGCCATGGTT 254402 Query 38138 CTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTG 38197 | | |||||| | || || ||| | ||| |||| || |||| |||||| ||| | | Sbjct 254403 CCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATATACCTAGCAG 254462 Query 38198 TGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATA 38257 | | |||||| | | | ||| || | || |||||||| || || || | || | Sbjct 254463 TATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTGGTTCCTCGAA 254522 Query 38258 TATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTG 38317 |||| | ||| | ||| |||||||||| | || || | ||||||||| || ||| Sbjct 254523 TATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCTGCA-GTCTTG 254581 Query 38318 ATATTAAA-GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATT 38376 || || || |||| ||| ||| ||||| ||||| | ||| ||| || ||| Sbjct 254582 CTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCTTCTGGAATT 254641 Query 38377 GGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGA 38436 || | ||| ||| |||||||| || ||| ||||| | || || | |||||| Sbjct 254642 CTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAAAGTGTAGGT 254701 Query 38437 GATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATA 38496 | |||||| | || |||||| ||||| | | ||||| || | || | || ||| Sbjct 254702 GTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTCAAGAGCAGCTTCAATA 254761 Query 38497 TCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATT 38556 ||||| | || ||||| ||| || | |||||| | ||| ||||||||||| | | | Sbjct 254762 TCACCACAATGTATACCACAAGAAACTCGCATTAGAAGATGCTGTGGTCTTTCCACAACT 254821 Query 38557 TTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATAT 38616 || |||| | | || ||||| ||| |||||| || || | |||||||| |||| Sbjct 254822 TTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGTCTTGAAGGCAAAATAATCATAT 254881 >seq223 Length=111419 Score = 185 bits (204), Expect = 8e-42 Identities = 565/858 (66%), Gaps = 28/858 (3%) Strand=Plus/Plus Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||| ||||| | ||||| |||||| ||||| || ||||||| ||||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459 |||| | ||||||||| ||||| | | ||| | |||| | | || Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974 Query 11460 ATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGAT 11519 |||||| || || ||||| ||||| |||| ||| | | |||||||||| ||||||| Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034 Query 11520 CCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | || |||| || | | |||| || | |||| | || ||| || || ||| || Sbjct 59035 CAACAGGAAGAGAATCA--CAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGAT 59092 Query 11578 CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATG---TTTAAACATTAAACACGC 11634 ||| || || || |||| | | ||| | | |||| | ||||| || || Sbjct 59093 TT--GTTGTA-CTCTAGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGC 59149 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||||||| ||||| ||||| || | || || ||||| || ||||| || | ||| || Sbjct 59150 AAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGG 59209 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||| | ||| |||||||| | |||||| |||||| ||| ||||||||| || ||||| Sbjct 59210 CATAAGTCCACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGATTCC 59269 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTT 11814 || || || ||| | | | ||| || || | | | | | |||||||| Sbjct 59270 TTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTATCACAATTCATCCATTT 59329 Query 11815 TCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATG 11874 | ||||| || || || ||||| || | || || || | ||| | | Sbjct 59330 AGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAA---G 59386 Query 11875 CATTTT---TTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGA 11931 ||||| |||| || | || | | |||| |||| || | ||| ||| | || Sbjct 59387 CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGAATATGTCTCATT 59446 Query 11932 ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGT-GCCTCTGAACACTGTA 11990 ||| || | ||| ||||| |||||||| |||| | |||| | || |||| |||| Sbjct 59447 ATGTATTTGTTCAATAGCCATTTGAAAAGCATA-ATACATTCTAGCTTCTGGTATTTGTA 59505 Query 11991 CATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 || | | ||||| || |||| || || || | |||||||||||||| | |||||| Sbjct 59506 TTTCTCTAAGAAAAT-TTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAA 59564 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCAATCA 12106 || ||||| | || ||| ||||||| | |||| |||||| | | |||||||| Sbjct 59565 AAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTA---AGACTTTCCCAATC- 59620 Query 12107 TCT-AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTT 12165 ||| |||||| |||||| | ||||||| |||||| ||| | | || ||| Sbjct 59621 TCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTT 59680 Query 12166 ATACATTTTCCAGATATC 12183 ||||||| ||| ||||| Sbjct 59681 ATACATTGACCAAATATC 59698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468519804354320