Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq290 306 3e-78
seq223 185 8e-42
>seq290
Length=478353
Score = 306 bits (338), Expect = 3e-78
Identities = 1198/1860 (64%), Gaps = 54/1860 (3%)
Strand=Plus/Plus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| || || |||| |||||| || ||| || ||||||| |||||| || || |||
Sbjct 253043 TCTACAGTAAATTGTATAGGGCGTGTTGCGCTTTGAGTTCTCAAATAATAAATGCCGGTT 253102
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|||| || | |||| || ||||||||||| | | ||||| | | | |||
Sbjct 253103 TTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTTTGCAAAGTTGGCATTT 253162
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
|| |||| || ||| || ||| ||| | | | | ||| || || || |||||
Sbjct 253163 TCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGACCCCTATCTGCAGCCATA 253222
Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029
|| | | ||||| || |||||||| || ||||| | | ||||| |||
Sbjct 253223 TCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAGCTCACGTATATCTTCT 253282
Query 37030 GGTAAATCTAA--ATGTT--GAATAGAACCATTATGTAACACAATTGTATTCT--TTATG 37083
|| || | || ||||| ||||| ||||||| | ||||| |||| | ||| |
Sbjct 253283 GG-AATTGTAGGTATGTTTTGAATACTTCCATTATTTG---CAATTATATTTTGCTTAAG 253338
Query 37084 TCATTATTCCACATATTTCTACTTATTAGTTCTC--TCAATAGGTGTGGATTTACAACCT 37141
| | ||| |||| | | | || | | || | | || ||||| || || ||
Sbjct 253339 CCTATCATCC-CATAATCCAAGTTCTAACAAATCATTTAGTAAATGTGGGTTCACTACAA 253397
Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201
|| || ||||||| || || | ||| ||||| |||| | || |||| ||
Sbjct 253398 AGAATTCACCAGATAGCACCCTACGATGATAAATATTTGAAGTAAAGGGCTCAAAACTCT 253457
Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261
|||| |||| ||| || || || ||||| |||||||||||||| | ||||| || ||
Sbjct 253458 CATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCATTGGAGATATTAAGAGAGAAT 253517
Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATA------AAT 37315
| | | |||| || ||||| | ||| ||| || ||| || || | |||
Sbjct 253518 TACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAATCCCAGTCACAAAGCCCAGAAT 253577
Query 37316 CTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGT 37375
||| || | | |||||||||| |||| | |||||||||||||| || || |
Sbjct 253578 CTGGTG---TAACTCCCCACATATCAAATTGCAAGATACCTTTACTCGCAGGTGATCCAG 253634
Query 37376 TATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCAT 37435
||||| ||| || || || | ||| || || || || |||| || || || || |
Sbjct 253635 AATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGCTAGCCTCAAGAGCTGCGT 253694
Query 37436 AATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATG-CA 37494
|||| || ||| ||||||| | |||| | |||| |||| || || | | ||
Sbjct 253695 AATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTTTATCTGAGTCATACGGCA 253754
Query 37495 TAGCCCAATAAT-ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATG 37553
|| | || || ||||| || || | || || || ||||| || | || | |||
Sbjct 253755 TA--CGAAGCATCATAAAGCAGTCCGCGAGCCCTTGGACGCCGATTCCCAACGGACGATG 253812
Query 37554 TTTCTTATTAGA-TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTAT 37612
| | ||| || | | || ||||| | | ||| || | || | || |||||
Sbjct 253813 TCTTAGATTTGAATTTTTAC-ATTCTGGGAGGGAATAGTACCCAAAGTCAACTACTTTAT 253871
Query 37613 TTAGATTTTTAACTAGTATT----TTCGTAATTATTCTCAACTTGTCGAACATAAATAC- 37667
||| ||| || ||| | ||||||| | | |||||||| || |||||
Sbjct 253872 TTAAATTC----CTCGTAATCACCTTCGTAACTTCCTTTAACTTGTCAAAATTAAATGTT 253927
Query 37668 --GTTAT---TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACT 37722
||||| ||| ||| || || ||| |||||| | |||||||| || |||| |
Sbjct 253928 TTGTTATCTTTATCAACGAACTTCGGTAACCCGATAGATGCCAGATTACAAACTGCAATT 253987
Query 37723 TCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCC 37782
|||||| | || | ||| || || ||||| || | ||||| || ||| ||||||
Sbjct 253988 TCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTACTTGAGACAATAGTTCCC 254047
Query 37783 AAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCT 37842
||||| |||| || ||| |||| || ||| ||||| ||| | ||||||||
Sbjct 254048 AAATTCTTTTGGTTACTTTTCCTATTTGCAGCATCCTTATAACAAATAAATGGCGTTCCC 254107
Query 37843 TGTTCTATTTGAGCCT-CGATAATAGATTTCCATAAACTTCTTGC--TTTAACGATCGCT 37899
||| |||||||||| | ||| || | | ||| || |||| ||| | | || |
Sbjct 254108 GTTTCAATTTGAGCCTGCAATATTAAAAACC---AAAGTTTTTGCGCTTTCATGGTCTTT 254164
Query 37900 TTA--AtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATA 37957
| | || ||| |||||||||| || ||||| |||| |||| ||||| |
Sbjct 254165 CTCCCACGCCCTTGTTT--TTCGTATTCTTCGTACAATTTCCTAAACTCATCACCCCAAA 254222
Query 37958 CATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTA 38017
|||| |||||| || ||| || ||||| | | ||| |||| ||| ||||| |
Sbjct 254223 CATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTCCAATCTTGATCCTTTTCAA 254282
Query 38018 CGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATT 38077
| | |||||||||| |||||| ||||| | |||| ||| | || ||| |
Sbjct 254283 CCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGACATCTCATCT 254342
Query 38078 CTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTT 38137
|||| || || || ||||| | | ||| || | | || ||||||||||
Sbjct 254343 CTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAAATGCCATGGTT 254402
Query 38138 CTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTG 38197
| | |||||| | || || ||| | ||| |||| || |||| |||||| ||| | |
Sbjct 254403 CCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATATACCTAGCAG 254462
Query 38198 TGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATA 38257
| | |||||| | | | ||| || | || |||||||| || || || | || |
Sbjct 254463 TATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTGGTTCCTCGAA 254522
Query 38258 TATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTG 38317
|||| | ||| | ||| |||||||||| | || || | ||||||||| || |||
Sbjct 254523 TATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCTGCA-GTCTTG 254581
Query 38318 ATATTAAA-GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATT 38376
|| || || |||| ||| ||| ||||| ||||| | ||| ||| || |||
Sbjct 254582 CTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCTTCTGGAATT 254641
Query 38377 GGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGA 38436
|| | ||| ||| |||||||| || ||| ||||| | || || | ||||||
Sbjct 254642 CTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAAAGTGTAGGT 254701
Query 38437 GATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATA 38496
| |||||| | || |||||| ||||| | | ||||| || | || | || |||
Sbjct 254702 GTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTCAAGAGCAGCTTCAATA 254761
Query 38497 TCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATT 38556
||||| | || ||||| ||| || | |||||| | ||| ||||||||||| | | |
Sbjct 254762 TCACCACAATGTATACCACAAGAAACTCGCATTAGAAGATGCTGTGGTCTTTCCACAACT 254821
Query 38557 TTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATAT 38616
|| |||| | | || ||||| ||| |||||| || || | |||||||| ||||
Sbjct 254822 TTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGTCTTGAAGGCAAAATAATCATAT 254881
>seq223
Length=111419
Score = 185 bits (204), Expect = 8e-42
Identities = 565/858 (66%), Gaps = 28/858 (3%)
Strand=Plus/Plus
Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399
|||| ||||| | ||||| |||||| ||||| || ||||||| ||||| ||| |
Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914
Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459
|||| | ||||||||| ||||| | | ||| | |||| | | ||
Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974
Query 11460 ATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGAT 11519
|||||| || || ||||| ||||| |||| ||| | | |||||||||| |||||||
Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034
Query 11520 CCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577
| || |||| || | | |||| || | |||| | || ||| || || ||| ||
Sbjct 59035 CAACAGGAAGAGAATCA--CAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGAT 59092
Query 11578 CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATG---TTTAAACATTAAACACGC 11634
||| || || || |||| | | ||| | | |||| | ||||| || ||
Sbjct 59093 TT--GTTGTA-CTCTAGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGC 59149
Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694
||||||| ||||| ||||| || | || || ||||| || ||||| || | ||| ||
Sbjct 59150 AAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGG 59209
Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754
||| | ||| |||||||| | |||||| |||||| ||| ||||||||| || |||||
Sbjct 59210 CATAAGTCCACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGATTCC 59269
Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTT 11814
|| || || ||| | | | ||| || || | | | | | ||||||||
Sbjct 59270 TTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTATCACAATTCATCCATTT 59329
Query 11815 TCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATG 11874
| ||||| || || || ||||| || | || || || | ||| | |
Sbjct 59330 AGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAA---G 59386
Query 11875 CATTTT---TTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGA 11931
||||| |||| || | || | | |||| |||| || | ||| ||| | ||
Sbjct 59387 CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGAATATGTCTCATT 59446
Query 11932 ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGT-GCCTCTGAACACTGTA 11990
||| || | ||| ||||| |||||||| |||| | |||| | || |||| ||||
Sbjct 59447 ATGTATTTGTTCAATAGCCATTTGAAAAGCATA-ATACATTCTAGCTTCTGGTATTTGTA 59505
Query 11991 CATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049
|| | | ||||| || |||| || || || | |||||||||||||| | ||||||
Sbjct 59506 TTTCTCTAAGAAAAT-TTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAA 59564
Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCAATCA 12106
|| ||||| | || ||| ||||||| | |||| |||||| | | ||||||||
Sbjct 59565 AAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTA---AGACTTTCCCAATC- 59620
Query 12107 TCT-AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTT 12165
||| |||||| |||||| | ||||||| |||||| ||| | | || |||
Sbjct 59621 TCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTT 59680
Query 12166 ATACATTTTCCAGATATC 12183
||||||| ||| |||||
Sbjct 59681 ATACATTGACCAAATATC 59698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468519804354320
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