Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq290 280 2e-70 seq223 233 3e-56 >seq290 Length=478353 Score = 280 bits (310), Expect = 2e-70 Identities = 1148/1800 (64%), Gaps = 36/1800 (2%) Strand=Plus/Plus Query 64877 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 64936 ||| || || || ||||||| ||| |||| || ||||||||||| | || || Sbjct 253087 ATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTT 253146 Query 64937 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 64996 | | | | | || | | ||||| ||||||| ||| ||| ||| | | | || Sbjct 253147 TGCAAAGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGACC 253206 Query 64997 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 65055 ||| ||||||||||| | || | ||||||||| ||||||||||| ||| ||||||| Sbjct 253207 CCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 253266 Query 65056 CTCGCTTAATATCTTCTGGAA-GGTTTGTA--TTCTGAATGGATCCACCATCTGCCATAA 65112 ||| | | ||||||||||||| || ||| || ||||| |||| || ||| || | Sbjct 253267 CTCACGT-ATATCTTCTGGAATTGTAGGTATGTTTTGAATACTTCCATTATTTGCAATTA 253325 Query 65113 TCCTATTCTTGATCTCATCATTCCATAAT----TTTCTCTCGGTTAAAACTCTAAGGAGA 65168 | | | ||| | | ||||| ||||||| |||| | ||| | | || | | Sbjct 253326 TATTTTGCTTAAGCCTATCATCCCATAATCCAAGTTCTAAC----AAATCATTTAGTAAA 253381 Query 65169 TGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 65228 || || || ||||| ||||| ||||| | || || ||| |||||||| ||| Sbjct 253382 TGTGGGTTCACTACAAAGAATTCACCAGATAGCACCCTACGATGATAAATATTTGAAGTA 253441 Query 65229 TACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 65288 | || || | | |||||| || || ||||| || | ||| || ||||| ||||| || Sbjct 253442 AAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCATTGGA 253501 Query 65289 GCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAA 65348 | | || | | ||| | || || || | |||| | ||||| || | ||||| Sbjct 253502 GATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAATCCCAG 253561 Query 65349 TTCCAAAGATCCGA---CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTG 65405 | ||||| | || ||| ||| ||| | ||||| ||||| Sbjct 253562 TCACAAAGCCCAGAATCTGGTGTAACTCCCCACATATCAAATTGCAAGATACCTTTACTC 253621 Query 65406 GCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCC 65465 || ||||| ||||| |||||||| || || || || || || ||||| || ||| Sbjct 253622 GCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGCTAGCC 253681 Query 65466 TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGG 65525 || | || ||||||| || ||| || || | ||||| || | || |||| Sbjct 253682 TCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTTTATCT 253741 Query 65526 CTATCAAATGG-ATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATAC 65583 ||| | || ||| ||| | ||||| ||| || | ||||| || || || | Sbjct 253742 GAGTCATACGGCATA--CGAAGCATCATAAAGCAGTCCGCGAGCCCTTGGACGCCGATTC 253799 Query 65584 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 65643 | | || | |||||| ||| || ||| | |||||| | | ||| || || | Sbjct 253800 CCAACGGACGATGTCTTAGATTTGAATTTTTACATTCTGGGAGGGAATAGTACCCAAAGT 253859 Query 65644 CTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT 65703 | | | |||||| | ||| || ||| || || || ||||| | ||| ||||| Sbjct 253860 CAACTACTTTATTTAAATTCCTCGTAATCACCTTCGTAACTTCCTTTAACTTGTCAAAAT 253919 Query 65704 CAAA---TCGCTCATCTATTACAAACATGTTC---AATGCAACAGATGCCAGATTACAAA 65757 ||| | | |||| | ||| | ||| || | | ||||||||||||||||| Sbjct 253920 TAAATGTTTTGTTATCTTTATCAACGAACTTCGGTAACCCGATAGATGCCAGATTACAAA 253979 Query 65758 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 65817 | || | |||| || | |||| ||||| || ||||| | ||||| | | Sbjct 253980 CTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTACTTGAGACAA 254039 Query 65818 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 65877 | ||||| ||||| | ||| ||||| || | || |||||||||||| ||| |||| Sbjct 254040 TAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCAGCATCCTTATAACAAATAAATG 254099 Query 65878 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 65937 | || || |||||||| |||| | | || ||| | | | || || || Sbjct 254100 GCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAACCAAAGTTTTTGCGCTTTCATGG 254159 Query 65938 TAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTC--GAACTCGTCTCC 65995 | | | | | || | |||||||| | |||||| ||| ||||| || || Sbjct 254160 TCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGTACAAT--TTCCTAAACTCATCACC 254217 Query 65996 CCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 66055 |||||||| | |||||| || || ||||| |||||||| | ||| ||| | ||| Sbjct 254218 CCAAACATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTCCAATCT---TGATC 254274 Query 66056 CTT---CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGT 66112 ||| || | | |||||| |||||||||| |||||| || ||| | || | Sbjct 254275 CTTTTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGACA 254334 Query 66113 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATG 66172 ||| || || ||||| || ||| ||| || | ||| | | || || |||| Sbjct 254335 TCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAAATG 254394 Query 66173 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 66232 ||| |||||||| || || || ||| | || ||||| || || ||||| || || Sbjct 254395 CCATGGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATATA 254454 Query 66233 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT 66292 ||||| || | ||||||||| | || ||||||||| | ||||| || | |||||||| Sbjct 254455 CCTAGCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTGGT 254514 Query 66293 CCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGC 66352 || ||||| ||| || | | ||||||||| | || | || | || ||||| Sbjct 254515 TCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCTGC 254574 Query 66353 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 66412 | || || ||| ||| ||| ||| ||| | || || | ||| || || Sbjct 254575 AGTCTTGCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCTTC 254634 Query 66413 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 66472 || | || | ||| || |||||||| | || ||||| | ||| || | Sbjct 254635 TGGAATTCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAAAG 254694 Query 66473 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 66532 ||||| | ||| || ||||| |||||| || | || | ||| ||||||| ||| | Sbjct 254695 TGTAGGTGTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTCAAGAGCAGC 254754 Query 66533 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592 || ||||| | ||| || || | || ||||||| | ||||| |||||||| Sbjct 254755 TTCAATATCACCACAATGTATACCACAAGAAACTCGCATTAGAAGATGCTGTGGTCTTTC 254814 Query 66593 AACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 66652 || | ||||| | ||| | | | |||||| |||| | ||| || || ||||||| Sbjct 254815 CACAACTTTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGTCTTGAAGGCAAAATA 254874 >seq223 Length=111419 Score = 233 bits (258), Expect = 3e-56 Identities = 581/868 (67%), Gaps = 23/868 (3%) Strand=Plus/Plus Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927 |||||||||| || || | |||||||| ||||| |||||||||| | ||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 35928 CCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 35987 |||| |||| || |||||| | |||||||| ||||| | | || || ||| | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974 Query 35988 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 36047 |||||| || |||||||| |||||| ||| | | ||||||| || ||||| | Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034 Query 36048 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 36107 ||| ||||||| || ||| || | | ||||| | || || |||| || || Sbjct 59035 CAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATTT 59094 Query 36108 ATATTACTGTTTCTTCACTCGGTGGATACAATAAATG---TTTAAACATCAAACATGCGA 36164 | |||| | | | ||| | | ||| | | |||| | || || || || | Sbjct 59095 GTTGTACTCTAGA---AGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGCAA 59151 Query 36165 AATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 |||| ||| ||||| || || || | || || | |||||| ||||| |||||||| ||| Sbjct 59152 AATCAGCA-TGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGGC 59210 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCC 36282 || || ||||| |||||||||||||| || | | |||| | | |||||||| || ||||| Sbjct 59211 ATAAGTCCACGTTTTTTAAGCCAAAAAATAG-CACAAAAGCTACCAGAAAATAAGATTCC 59269 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC---ATGTATCCA 36339 ||| ||||| || |||||| |||||| || || | || || || ||||| Sbjct 59270 TTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTATCACAATTCATCCA 59326 Query 36340 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 || ||||| || ||||| ||||| || | || || || | ||| || Sbjct 59327 TTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAAG 59386 Query 36400 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCC 36457 | ||| ||| | || ||| |||| ||||||| | || || ||| | || Sbjct 59387 CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGA--ATATGTCTCA 59444 Query 36458 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCTG 36516 ||| || | |||||| ||||||||||| | || | ||| |||||| || | || || Sbjct 59445 TTATGTATTTGTTCAATAGCCATTTGAAAAGCATA-ATACATTCTAGCTTCTGGTATTTG 59503 Query 36517 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 36576 || |||| || ||| | | || || ||||| | || || || ||||| || ||||| Sbjct 59504 TATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAA 59563 Query 36577 AAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATT 36636 ||| || | |||| ||| ||||| | | |||| | | || | | |||||| | Sbjct 59564 AAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAATCTCT 59623 Query 36637 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 36696 | ||||| | || ||| | |||||| |||||||||||| || || |||||||| Sbjct 59624 GGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATA 59683 Query 36697 CATATTCCAGATGTCATGATATTGAATT 36724 ||| ||| || || | | ||| |||| Sbjct 59684 CATTGACCAAATATCTTCA-ATTAAATT 59710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658165782232520