Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq290 340 3e-88 seq223 212 9e-50 >seq290 Length=478353 Score = 340 bits (376), Expect = 3e-88 Identities = 1170/1805 (65%), Gaps = 46/1805 (3%) Strand=Plus/Plus Query 78756 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTT 78815 ||| || || || ||||||| ||| |||| || || |||||||| | || || Sbjct 253087 ATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTT 253146 Query 78816 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 78875 | | | | | || | | ||||| ||||||| ||| ||| ||| | | | || Sbjct 253147 TGCAAAGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGACC 253206 Query 78876 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 78934 ||| ||||||||||| | || | ||||||||| ||||||||||| ||| ||||||| Sbjct 253207 CCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 253266 Query 78935 CTCGCTTAATATCTTCTGGAA-GGTTTGTA--TTCTGAATGGATCCACCATCTGCCATAA 78991 ||| | | ||||||||||||| || ||| || ||||| |||| || ||| || | Sbjct 253267 CTCACGT-ATATCTTCTGGAATTGTAGGTATGTTTTGAATACTTCCATTATTTGCAATTA 253325 Query 78992 TCCTATTCTTGATCTCTTCATTCCATAAT----TTTCTCTCGGTTAAAACTCTAAGGAGA 79047 | | | ||| | | |||| ||||||| |||| | ||| | | || | | Sbjct 253326 TATTTTGCTTAAGCCTATCATCCCATAATCCAAGTTCTAAC----AAATCATTTAGTAAA 253381 Query 79048 TGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 79107 || || || ||||| ||||| ||||| | || || ||| |||||||| ||| Sbjct 253382 TGTGGGTTCACTACAAAGAATTCACCAGATAGCACCCTACGATGATAAATATTTGAAGTA 253441 Query 79108 TATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGT 79167 | || || | ||||| || || ||||| || | ||| || || || ||||| || Sbjct 253442 AAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCATTGGA 253501 Query 79168 GCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAA 79227 | | || | | ||| | || || || |||| | ||||| || || ||||| Sbjct 253502 GATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAATCCCAG 253561 Query 79228 TCCCAAAGATCAGA---CGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTA 79284 || ||||| |||| || ||| ||| | |||| |||| | ||||| ||||| Sbjct 253562 TCACAAAGCCCAGAATCTGGTGTAACTCCCCACATATCAAATTGCAAGATACCTTTACTC 253621 Query 79285 GCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCC 79344 || |||||| | |||| || || || || || ||||| || | ||||| || ||| Sbjct 253622 GCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGCTAGCC 253681 Query 79345 TCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGG 79404 || | ||| ||||||| || ||| ||||| | ||||| || | || |||| || Sbjct 253682 TCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTT-TATC 253740 Query 79405 CTA-TCAAATGG-ATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATA 79461 | ||| | || ||| ||| | ||||| ||| || | ||||| || || || Sbjct 253741 TGAGTCATACGGCATA--CGAAGCATCATAAAGCAGTCCGCGAGCCCTTGGACGCCGATT 253798 Query 79462 CCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATA 79521 || | || | |||||| ||| ||| ||| | |||||| | | ||| || || Sbjct 253799 CCCAACGGACGATGTCTTAGATTTGAATTTTTACATTCTGGGAGGGAATAGTACCCAAAG 253858 Query 79522 TCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAA 79581 || | | |||||| | |||||| || || || || ||||||| ||| |||| Sbjct 253859 TCAACTACTTTATTTAAATTCCTCGTAATCACCTTCGTAACTTCCTTTAACTTGTCAAAA 253918 Query 79582 TCAAATCGT---CCATCTATTACAAACATGTTC---AACGCGACAGATGCCAGATTACAA 79635 | |||| | |||| | ||| | ||| ||| ||| |||||||||||||||| Sbjct 253919 TTAAATGTTTTGTTATCTTTATCAACGAACTTCGGTAACCCGATAGATGCCAGATTACAA 253978 Query 79636 ACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTA 79695 || || | |||| || | |||| |||||||| ||||| | |||||| | | Sbjct 253979 ACTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTACTTGAGACA 254038 Query 79696 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAC 79755 || ||||| ||||| | ||| ||||| || | || |||||||||||| ||| || Sbjct 254039 ATAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCAGCATCCTTATAACAAATAAAT 254098 Query 79756 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATT 79815 || || || |||||||| |||| | | || ||| | | | || | | Sbjct 254099 GGCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAACCAAAGTTTTTGCGC---TTTC 254155 Query 79816 ATAGACTTGTAT----CTCTTTTCTCTTTCGTATTGTGTATATAATCGTTC--GAACTCG 79869 || | ||| | | | | || | ||||||||| | || ||| ||| ||||| Sbjct 254156 ATGGTCTT-TCTCCCACGCCCTTGTTTTTCGTATTCTTCGTACAAT--TTCCTAAACTCA 254212 Query 79870 TCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCA 79929 || ||||||||||| | ||||| || ||||| || |||||||| | ||| ||| Sbjct 254213 TCACCCCAAACATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTCCAATCT--- 254269 Query 79930 TCATCCTTT---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCT 79986 | ||||||| || | | |||||| |||||||||| |||||| || ||| || || Sbjct 254270 TGATCCTTTTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCA 254329 Query 79987 CTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCA 80046 | ||| ||| || ||||| || ||| ||| || | ||| | | || || Sbjct 254330 CGACATCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCC 254389 Query 80047 GAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCT 80106 ||||||| |||||||| || || || ||| | || ||||| || || ||||| Sbjct 254390 AAATGCCATGGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCA 254449 Query 80107 ATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCA 80166 || || ||||| || | ||||||||| | || ||||||||| | ||||| || | ||| Sbjct 254450 ATATACCTAGCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCA 254509 Query 80167 TTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCC 80226 ||||| || ||||| ||| | | | ||||||||| | || | || | || Sbjct 254510 TTGGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCA 254569 Query 80227 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTA 80286 ||||| | || || ||| ||| ||| ||| ||| | || || | ||| Sbjct 254570 CCTGCAGTCTTGCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAG 254629 Query 80287 TCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 80346 || || || | || | ||| || |||||||| | || ||||| | ||| Sbjct 254630 TCTTCTGGAATTCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTG 254689 Query 80347 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA 80406 || | ||||| | ||| || ||||| |||||| |||| || | ||| ||||||| | Sbjct 254690 AAAAGTGTAGGTGTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTCAAGA 254749 Query 80407 GCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGT 80466 || | ||| ||||| | ||| || || | || ||||||| | ||||| ||| Sbjct 254750 GCAGCTTCAATATCACCACAATGTATACCACAAGAAACTCGCATTAGAAGATGCTGTGGT 254809 Query 80467 CTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCA 80526 ||||| || | ||||||| ||| | | | || ||| |||| | ||| || || || Sbjct 254810 CTTTCCACAACTTTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGTCTTGAAGGCA 254869 Query 80527 AAATA 80531 ||||| Sbjct 254870 AAATA 254874 >seq223 Length=111419 Score = 212 bits (234), Expect = 9e-50 Identities = 564/846 (67%), Gaps = 28/846 (3%) Strand=Plus/Plus Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 |||||||||| || || | |||||||| ||||| ||||| |||| | ||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 |||| ||||||| |||||||| |||||||| ||||| | | || || ||| | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 |||||| || |||||||| |||||| ||| | | ||||||| || ||||| | Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034 Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909 ||| ||||||| || ||| || | | ||||| || || |||| || || Sbjct 59035 CAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATTT 59094 Query 49910 ATCTAACGGTTTCTTCAC-TCGGTGGATGCAATAAATG---TTTAAACATCAAACATGCG 49965 | || ||| | | ||| | | ||| | | |||| | || || || || Sbjct 59095 GTTGTAC----TCTAGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGCA 59150 Query 49966 AAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 50024 ||||| ||| || || || || || | || || |||||||| ||||| |||||||| || Sbjct 59151 AAATCAGCA-TGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGG 59209 Query 50025 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ACCCAGAAAAGAAGATTC 50083 ||| || ||||| |||||||||||||| || | | |||| | |||||||| ||||||| Sbjct 59210 CATAAGTCCACGTTTTTTAAGCCAAAAAATAG-CACAAAAGCTACCAGAAAATAAGATTC 59268 Query 50084 CTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC---ATGTATCC 50140 |||| ||||| || ||| || |||||| || || | || || || |||| Sbjct 59269 CTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTATCACAATTCATCC 59325 Query 50141 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 50200 | || ||||| || ||||| ||||| || | || || || | ||| | Sbjct 59326 ATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAA 59385 Query 50201 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTC 50258 | | ||| ||| | || ||| ||| |||| || | || || ||| | || Sbjct 59386 GCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGA--ATATGTCTC 59443 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCT 50317 ||| || | |||||| ||||| ||||| | || | ||| |||||| || | || | Sbjct 59444 ATTATGTATTTGTTCAATAGCCATTTGAAAAGCATA-ATACATTCTAGCTTCTGGTATTT 59502 Query 50318 GCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 50377 | | |||| || ||| | | || || ||||| | || || || ||||| || |||| Sbjct 59503 GTATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAA 59562 Query 50378 AAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT--AGTTTATTCCAATC 50435 |||| || | |||| ||| ||||| ||| |||| || | || || | | |||||| Sbjct 59563 AAAAGGCTAGAACATATTTGATAAAGTGTCTTTC--AGGATCTTTAAGACTTTCCCAATC 59620 Query 50436 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 50495 || ||||| | || ||| | |||||| |||||||||||| || || ||||| Sbjct 59621 TCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTT 59680 Query 50496 ATACAT 50501 |||||| Sbjct 59681 ATACAT 59686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718261141458920