Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq223 246 3e-60
>seq223
Length=111419
Score = 246 bits (272), Expect = 3e-60
Identities = 582/868 (67%), Gaps = 41/868 (5%)
Strand=Plus/Plus
Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641
|||| ||||| | |||||| ||||| ||||| || |||||||||| ||||| ||| |
Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914
Query 13642 CCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGT 13700
|||| ||||||| ||||| | ||||| | | | ||| | ||| | || |||
Sbjct 58915 CCATCCAATCAAAAGGATTGGT-GACATTATATATTTTGGGGACATCTAAAGCAAAAAGT 58973
Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 13759
| ||||||||| | ||| ||||||||||||| ||| || || |||||||||| || ||
Sbjct 58974 AGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTGGAATTCATACCAATAAG 59032
Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819
| ||||||| || | || | | |||| | | ||||| ||| || ||
Sbjct 59033 ATCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGAT 59092
Query 13820 AATTGTAATAATCTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACA 13873
|||| || ||| ||||| || | |||| || |||| | ||||| ||
Sbjct 59093 --TTGTTGTACTCT----AGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCA 59146
Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933
||||||||| ||| || || ||||| | || ||||||||||||||||| || | |||
Sbjct 59147 AGCAAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCC 59206
Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993
||||| | ||| |||||||| | |||||| || ||| ||| || ||||| || ||
Sbjct 59207 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGAT 59266
Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14053
||| ||||||||| || | || | || || |||| ||| | ||| ||
Sbjct 59267 TCCTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTATCACAATTC---AT 59323
Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAA----TAAAAT-----CCATTGTTTC-AA 14103
|||||| | ||||| || | |||||||||| | |||| |||| ||| ||
Sbjct 59324 CCATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAA 59383
Query 14104 TAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 14163
|||||| | | | |||||| | | ||| ||| ||||||| |||||
Sbjct 59384 AAGCATTTGA--------CGT--TCTTTAATTTCAGTAATATATCTATCAATGAGTAATG 59433
Query 14164 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTT 14223
||| | ||| ||||| | ||| ||||| || |||||| ||||| | ||||||||
Sbjct 59434 AATATGTCTCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTT 59493
Query 14224 CCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282
| | ||||| ||| | | ||||| || | ||||| ||||| |||| |||||||||
Sbjct 59494 CTGGTATTTGTATTTCTCTAAGAAAAT-TTACCGCCAAGTTTTCCATAACAATACCATCA 59552
Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14342
|| || |||||||| || | | | ||| ||||||| | || || || || ||
Sbjct 59553 CTTGCAGCAAAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTT 59612
Query 14343 TTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14402
| |||||| |||| | | | ||| | ||| ||| |||||| || ||
Sbjct 59613 TCCCAATCTCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCA 59672
Query 14403 GCTTTTTTATACATTACCCATATTTCTT 14430
||||||||||||||| ||| || ||||
Sbjct 59673 GCTTTTTTATACATTGACCAAATATCTT 59700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479722884900200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |