Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq223 246 3e-60 >seq223 Length=111419 Score = 246 bits (272), Expect = 3e-60 Identities = 582/868 (67%), Gaps = 41/868 (5%) Strand=Plus/Plus Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 |||| ||||| | |||||| ||||| ||||| || |||||||||| ||||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 13642 CCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGT 13700 |||| ||||||| ||||| | ||||| | | | ||| | ||| | || ||| Sbjct 58915 CCATCCAATCAAAAGGATTGGT-GACATTATATATTTTGGGGACATCTAAAGCAAAAAGT 58973 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 13759 | ||||||||| | ||| ||||||||||||| ||| || || |||||||||| || || Sbjct 58974 AGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTGGAATTCATACCAATAAG 59032 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 | ||||||| || | || | | |||| | | ||||| ||| || || Sbjct 59033 ATCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGAT 59092 Query 13820 AATTGTAATAATCTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACA 13873 |||| || ||| ||||| || | |||| || |||| | ||||| || Sbjct 59093 --TTGTTGTACTCT----AGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCA 59146 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 ||||||||| ||| || || ||||| | || ||||||||||||||||| || | ||| Sbjct 59147 AGCAAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCC 59206 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993 ||||| | ||| |||||||| | |||||| || ||| ||| || ||||| || || Sbjct 59207 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGAT 59266 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14053 ||| ||||||||| || | || | || || |||| ||| | ||| || Sbjct 59267 TCCTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTATCACAATTC---AT 59323 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAA----TAAAAT-----CCATTGTTTC-AA 14103 |||||| | ||||| || | |||||||||| | |||| |||| ||| || Sbjct 59324 CCATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAA 59383 Query 14104 TAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 14163 |||||| | | | |||||| | | ||| ||| ||||||| ||||| Sbjct 59384 AAGCATTTGA--------CGT--TCTTTAATTTCAGTAATATATCTATCAATGAGTAATG 59433 Query 14164 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTT 14223 ||| | ||| ||||| | ||| ||||| || |||||| ||||| | |||||||| Sbjct 59434 AATATGTCTCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTT 59493 Query 14224 CCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 | | ||||| ||| | | ||||| || | ||||| ||||| |||| ||||||||| Sbjct 59494 CTGGTATTTGTATTTCTCTAAGAAAAT-TTACCGCCAAGTTTTCCATAACAATACCATCA 59552 Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14342 || || |||||||| || | | | ||| ||||||| | || || || || || Sbjct 59553 CTTGCAGCAAAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTT 59612 Query 14343 TTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14402 | |||||| |||| | | | ||| | ||| ||| |||||| || || Sbjct 59613 TCCCAATCTCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCA 59672 Query 14403 GCTTTTTTATACATTACCCATATTTCTT 14430 ||||||||||||||| ||| || |||| Sbjct 59673 GCTTTTTTATACATTGACCAAATATCTT 59700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479722884900200