Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq223 235 5e-57 >seq223 Length=111419 Score = 235 bits (260), Expect = 5e-57 Identities = 584/865 (68%), Gaps = 35/865 (4%) Strand=Plus/Plus Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 |||| ||||| | |||||| ||||| || || || |||||||||| ||||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 13430 CCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAAT 13488 |||| |||| || ||||| || ||||| | | | ||| | ||| | || | | Sbjct 58915 CCATCCAATCAAAAGGATTGGT-GACATTATATATTTTGGGGACATCTAAAGCAAAAAGT 58973 Query 13489 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 13547 | ||||||||| | ||| ||||||||||||| ||| || || |||||||||| || || Sbjct 58974 AGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTGGAATTCATACCAATAAG 59032 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 | ||||||| || | | || | | |||| | | ||||| || || || Sbjct 59033 ATCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGAT 59092 Query 13608 AATCTTAATAATGTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACA 13661 | || || | | ||||| || | |||| || |||| | ||||| || Sbjct 59093 T-TGTTG-TACTCT----AGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCA 59146 Query 13662 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13721 ||||||||| ||| || || ||||| | || ||||||||||||||||| || | ||| Sbjct 59147 AGCAAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCC 59206 Query 13722 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATA 13780 ||||| | ||| |||||||| | |||||| || ||| | || | | || ||||| || | Sbjct 59207 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCA-CAAAAGCTACCAGAAAATAAGA 59265 Query 13781 TTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATA 13840 |||| ||||||||| || | || | || || |||| ||| || | || || Sbjct 59266 TTCCTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGAT-CTATCACAATTCAT- 59323 Query 13841 TCCATTTTCTAGCCCATTCAGAtttttttttAA----TAAAATCCATTGTTTCGATTGCA 13896 |||||| | ||||| || | |||||||||| | |||| || |||||| Sbjct 59324 -CCATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATA---TGAGA-GATTGC- 59377 Query 13897 TTGAATAA--ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 || || || || | | | |||||| | | ||| ||| ||||||| ||||| || Sbjct 59378 TTCAAAAAGCATTTGACGT-TCTTTAATTTCAGTAATATATCTATCAATGAGTAATGAAT 59436 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 | | ||| ||||| | ||| ||||| || |||||| ||||| | ||||||||||| Sbjct 59437 ATGTCTCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTG 59496 Query 14015 ACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTA 14073 ||||| || | | ||||| || | ||||||||||| |||||||||||||||| Sbjct 59497 GTATTTGTATTTCTCTAAGAAAAT-TTACCGCCAAGTTTTCCATAACAATACCATCACTT 59555 Query 14074 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14133 || |||||||| || | | | ||| ||||||| | || || || || ||| | Sbjct 59556 GCAGCAAAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCC 59615 Query 14134 CAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14193 ||||| |||| | | | ||| | ||| ||| |||||| || ||||| Sbjct 59616 CAATCTCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCT 59675 Query 14194 TTTTTATACATTACCCATATTTCTT 14218 |||||||||||| ||| || |||| Sbjct 59676 TTTTTATACATTGACCAAATATCTT 59700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478583697046920