Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq290 315 1e-80
seq223 223 5e-53
>seq290
Length=478353
Score = 315 bits (348), Expect = 1e-80
Identities = 1154/1800 (64%), Gaps = 36/1800 (2%)
Strand=Plus/Plus
Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898
||| || ||||| ||||||| ||| |||| || ||||||||||| | || ||
Sbjct 253087 ATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTT 253146
Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958
| | || | | || | || |||||||||| |||||| ||| | | | ||
Sbjct 253147 TGCAAAGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGACC 253206
Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 71017
||| ||||||||||| | || | ||||||||| ||||||||||| ||| |||||||
Sbjct 253207 CCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 253266
Query 71018 CTCGCTTAATATCTTCTGGAA-GGTTTGTA--TTCTGAATGGATCCACCATCTGCAATAA 71074
||| | | ||||||||||||| || ||| || ||||| |||| || |||||| |
Sbjct 253267 CTCACGT-ATATCTTCTGGAATTGTAGGTATGTTTTGAATACTTCCATTATTTGCAATTA 253325
Query 71075 TCCTATTTTTGATCTCTTCATTCCATAAT----TTTCTCTCGGTTAAAACTCTAAGGAGA 71130
| | | || | | |||| ||||||| |||| | ||| | | || | |
Sbjct 253326 TATTTTGCTTAAGCCTATCATCCCATAATCCAAGTTCTAAC----AAATCATTTAGTAAA 253381
Query 71131 TGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTA 71190
|| || || ||||| ||||| ||||| | || |||||| |||||||| |||
Sbjct 253382 TGTGGGTTCACTACAAAGAATTCACCAGATAGCACCCTACGATGATAAATATTTGAAGTA 253441
Query 71191 TACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 71250
| || || | |||||| || || ||||| || | ||| || ||||| ||||| ||
Sbjct 253442 AAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCATTGGA 253501
Query 71251 GCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAA 71310
| | || ||| ||| | || |||| |||| | ||||| || || |||||
Sbjct 253502 GATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAATCCCAG 253561
Query 71311 TTCCAAAGATCCGA---TGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTA 71367
| ||||| | || |||| ||| || || |||||
Sbjct 253562 TCACAAAGCCCAGAATCTGGTGTAACTCCCCACATATCAAATTGCAAGATACCTTTACTC 253621
Query 71368 GCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCC 71427
|| |||||| | ||||| |||||||| || |||||||| || || ||||| || |||
Sbjct 253622 GCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGCTAGCC 253681
Query 71428 TCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT---TCC 71484
|| | ||| | ||||| || ||| ||||| | ||||| || | || ||| ||
Sbjct 253682 TCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTTTATCT 253741
Query 71485 GGGCTATCAAATGG-ATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAA 71542
| | ||| | || ||| ||| | ||||| ||| || | ||||| ||||| |
Sbjct 253742 GAG---TCATACGGCATA--CGAAGCATCATAAAGCAGTCCGCGAGCCCTTGGACGCCGA 253796
Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602
| || | || | ||||| ||| ||| ||| | |||||| | | ||| || ||
Sbjct 253797 TTCCCAACGGACGATGTCTTAGATTTGAATTTTTACATTCTGGGAGGGAATAGTACCCAA 253856
Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 71662
|| | | |||||| | ||| || || || || || ||||||| ||| ||
Sbjct 253857 AGTCAACTACTTTATTTAAATTCCTCGTAATCACCTTCGTAACTTCCTTTAACTTGTCAA 253916
Query 71663 AATCAAA---TCTCCCATCTATTACAAACACGTTC---AAGGCAACAGATGCCAGATTAC 71716
||| ||| | | |||| | ||| | ||| || | | ||||||||||||||
Sbjct 253917 AATTAAATGTTTTGTTATCTTTATCAACGAACTTCGGTAACCCGATAGATGCCAGATTAC 253976
Query 71717 AAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACT 71776
|||| || | |||| || | |||| || ||||| ||||| | ||||| |
Sbjct 253977 AAACTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTACTTGAGA 254036
Query 71777 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAA 71836
|| ||||| ||||| | ||| ||||| || | || |||||||||||| |||||
Sbjct 254037 CAATAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCAGCATCCTTATAACAAATAA 254096
Query 71837 ACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 71896
| || || || |||||||| |||| | | || ||| | | | || || |
Sbjct 254097 ATGGCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAACCAAAGTTTTTGCGCTTTCA 254156
Query 71897 TTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTC--GAACTCGTC 71954
| | || | | | || | ||||||||| | || ||| ||| ||||| ||
Sbjct 254157 TGGTCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGTACAAT--TTCCTAAACTCATC 254214
Query 71955 TCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATC 72014
|||||| ||| | ||||| || || | ||| |||||||| | ||| ||| |||
Sbjct 254215 ACCCCAAACATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTCCAATCTTGATC 254274
Query 72015 ATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 72074
| | || | | |||||| |||||||||| |||||| || ||| || || |
Sbjct 254275 CTTTTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGACA 254334
Query 72075 TCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 72134
||| ||| || ||||| || ||| ||| || | ||| | | || || ||||
Sbjct 254335 TCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAAATG 254394
Query 72135 CCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194
||| |||||||| || || || ||| | || ||||| || || ||||| || ||
Sbjct 254395 CCATGGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATATA 254454
Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 72254
||||| || | ||||||||| | || ||||||||| | ||||| || ||||||||
Sbjct 254455 CCTAGCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTGGT 254514
Query 72255 CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGC 72314
|| ||||| ||| | | | |||||| || | || | || | || |||||
Sbjct 254515 TCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCTGC 254574
Query 72315 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 72374
| || || ||| ||| ||| ||| ||| | || || | ||| || ||
Sbjct 254575 AGTCTTGCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCTTC 254634
Query 72375 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 72434
|| | || | ||| || |||||||| | || ||||| | ||| || |
Sbjct 254635 TGGAATTCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAAAG 254694
Query 72435 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGA 72494
||||| | ||| || ||||| |||||| |||| || | ||| ||||||| ||| |
Sbjct 254695 TGTAGGTGTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTCAAGAGCAGC 254754
Query 72495 TTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554
||| ||||| | |||||| || | || ||||||| | |||||| ||||||||
Sbjct 254755 TTCAATATCACCACAATGTATACCACAAGAAACTCGCATTAGAAGATGCTGTGGTCTTTC 254814
Query 72555 AACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 72614
|| | ||||||| ||| | | | |||||| |||| | ||| || || |||||||
Sbjct 254815 CACAACTTTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGTCTTGAAGGCAAAATA 254874
>seq223
Length=111419
Score = 223 bits (246), Expect = 5e-53
Identities = 581/870 (67%), Gaps = 27/870 (3%)
Strand=Plus/Plus
Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834
|||||||||| || || | |||||||| ||||| || || |||| | ||| ||| |
Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914
Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 41894
|||| ||||||| |||||||| |||||||| ||||| | | || || ||| |
Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974
Query 41895 ATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 41954
|||||| || | ||||| |||||| ||| | | ||||||| || ||||| |
Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034
Query 41955 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 42014
||| ||||||| || ||| || | | ||||| | || || |||| || ||
Sbjct 59035 CAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATTT 59094
Query 42015 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATG---TTTAAACATCAAACATGCGA 42071
| |||| | | | ||| | | ||| | | |||| | || || || || |
Sbjct 59095 GTTGTACTCTAGA---AGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGCAA 59151
Query 42072 AATC-GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130
|||| ||| || || || ||||| | || || | |||||| ||||| |||||||| |||
Sbjct 59152 AATCAGCA-TGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGGC 59210
Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCC 42189
|| || ||||| |||||||||||||| |||| | |||| | | |||||||| ||||||||
Sbjct 59211 ATAAGTCCACGTTTTTTAAGCCAAAAAATAG-CACAAAAGCTACCAGAAAATAAGATTCC 59269
Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC---ATGTATCCA 42246
||| ||||| || |||||| |||||| || || | || || || |||||
Sbjct 59270 TTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTATCACAATTCATCCA 59326
Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306
|| ||||| || ||||| ||||| || | || || || | ||| ||
Sbjct 59327 TTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAAG 59386
Query 42307 ATAGtttttttCATTACTATCTTTAACATATGTATCGATCA--AAAGACTATACATTTCT 42364
| ||| ||| | || ||| |||| |||| || | || || ||| | ||
Sbjct 59387 CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGA--ATATGTCTCA 59444
Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTGGCCTCGGTAACCTG 42423
||| || | |||||| ||||| ||||| | || | ||| ||| || || | | ||
Sbjct 59445 TTATGTATTTGTTCAATAGCCATTTGAAAAGCATA-ATACATTCTAGCTTCTGGTATTTG 59503
Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483
|| |||| || ||| | | || || ||||| | || || || ||||| || |||||
Sbjct 59504 TATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAA 59563
Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543
||| || | |||| ||| ||||| | | |||| | | | | | |||||| |
Sbjct 59564 AAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAATCTCT 59623
Query 42544 GATATCTTTAGATATATCTACTTCTTC--TACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601
| ||||| | || ||| | |||||| || | ||||||||||||||| || ||||||
Sbjct 59624 GGAATCTTGACTTAAATCAATTTCTTCAGTAAC--CCAAAATGATGCTTCAGCTTTTTTA 59681
Query 42602 TACATATTCCAGATATCATGATATTGAATT 42631
||||| ||| ||||| | | ||| ||||
Sbjct 59682 TACATTGACCAAATATCTTCA-ATTAAATT 59710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671132043978280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |