Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq290 315 1e-80 seq223 223 5e-53 >seq290 Length=478353 Score = 315 bits (348), Expect = 1e-80 Identities = 1154/1800 (64%), Gaps = 36/1800 (2%) Strand=Plus/Plus Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 ||| || ||||| ||||||| ||| |||| || ||||||||||| | || || Sbjct 253087 ATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTT 253146 Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958 | | || | | || | || |||||||||| |||||| ||| | | | || Sbjct 253147 TGCAAAGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGACC 253206 Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 71017 ||| ||||||||||| | || | ||||||||| ||||||||||| ||| ||||||| Sbjct 253207 CCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 253266 Query 71018 CTCGCTTAATATCTTCTGGAA-GGTTTGTA--TTCTGAATGGATCCACCATCTGCAATAA 71074 ||| | | ||||||||||||| || ||| || ||||| |||| || |||||| | Sbjct 253267 CTCACGT-ATATCTTCTGGAATTGTAGGTATGTTTTGAATACTTCCATTATTTGCAATTA 253325 Query 71075 TCCTATTTTTGATCTCTTCATTCCATAAT----TTTCTCTCGGTTAAAACTCTAAGGAGA 71130 | | | || | | |||| ||||||| |||| | ||| | | || | | Sbjct 253326 TATTTTGCTTAAGCCTATCATCCCATAATCCAAGTTCTAAC----AAATCATTTAGTAAA 253381 Query 71131 TGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTA 71190 || || || ||||| ||||| ||||| | || |||||| |||||||| ||| Sbjct 253382 TGTGGGTTCACTACAAAGAATTCACCAGATAGCACCCTACGATGATAAATATTTGAAGTA 253441 Query 71191 TACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 71250 | || || | |||||| || || ||||| || | ||| || ||||| ||||| || Sbjct 253442 AAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCATTGGA 253501 Query 71251 GCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAA 71310 | | || ||| ||| | || |||| |||| | ||||| || || ||||| Sbjct 253502 GATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAATCCCAG 253561 Query 71311 TTCCAAAGATCCGA---TGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTA 71367 | ||||| | || |||| ||| || || ||||| Sbjct 253562 TCACAAAGCCCAGAATCTGGTGTAACTCCCCACATATCAAATTGCAAGATACCTTTACTC 253621 Query 71368 GCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCC 71427 || |||||| | ||||| |||||||| || |||||||| || || ||||| || ||| Sbjct 253622 GCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGCTAGCC 253681 Query 71428 TCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT---TCC 71484 || | ||| | ||||| || ||| ||||| | ||||| || | || ||| || Sbjct 253682 TCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTTTATCT 253741 Query 71485 GGGCTATCAAATGG-ATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAA 71542 | | ||| | || ||| ||| | ||||| ||| || | ||||| ||||| | Sbjct 253742 GAG---TCATACGGCATA--CGAAGCATCATAAAGCAGTCCGCGAGCCCTTGGACGCCGA 253796 Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 | || | || | ||||| ||| ||| ||| | |||||| | | ||| || || Sbjct 253797 TTCCCAACGGACGATGTCTTAGATTTGAATTTTTACATTCTGGGAGGGAATAGTACCCAA 253856 Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 71662 || | | |||||| | ||| || || || || || ||||||| ||| || Sbjct 253857 AGTCAACTACTTTATTTAAATTCCTCGTAATCACCTTCGTAACTTCCTTTAACTTGTCAA 253916 Query 71663 AATCAAA---TCTCCCATCTATTACAAACACGTTC---AAGGCAACAGATGCCAGATTAC 71716 ||| ||| | | |||| | ||| | ||| || | | |||||||||||||| Sbjct 253917 AATTAAATGTTTTGTTATCTTTATCAACGAACTTCGGTAACCCGATAGATGCCAGATTAC 253976 Query 71717 AAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACT 71776 |||| || | |||| || | |||| || ||||| ||||| | ||||| | Sbjct 253977 AAACTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTACTTGAGA 254036 Query 71777 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAA 71836 || ||||| ||||| | ||| ||||| || | || |||||||||||| ||||| Sbjct 254037 CAATAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCAGCATCCTTATAACAAATAA 254096 Query 71837 ACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 71896 | || || || |||||||| |||| | | || ||| | | | || || | Sbjct 254097 ATGGCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAACCAAAGTTTTTGCGCTTTCA 254156 Query 71897 TTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTC--GAACTCGTC 71954 | | || | | | || | ||||||||| | || ||| ||| ||||| || Sbjct 254157 TGGTCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGTACAAT--TTCCTAAACTCATC 254214 Query 71955 TCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATC 72014 |||||| ||| | ||||| || || | ||| |||||||| | ||| ||| ||| Sbjct 254215 ACCCCAAACATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTCCAATCTTGATC 254274 Query 72015 ATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 72074 | | || | | |||||| |||||||||| |||||| || ||| || || | Sbjct 254275 CTTTTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGACA 254334 Query 72075 TCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 72134 ||| ||| || ||||| || ||| ||| || | ||| | | || || |||| Sbjct 254335 TCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAAATG 254394 Query 72135 CCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194 ||| |||||||| || || || ||| | || ||||| || || ||||| || || Sbjct 254395 CCATGGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATATA 254454 Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 72254 ||||| || | ||||||||| | || ||||||||| | ||||| || |||||||| Sbjct 254455 CCTAGCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTGGT 254514 Query 72255 CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGC 72314 || ||||| ||| | | | |||||| || | || | || | || ||||| Sbjct 254515 TCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCTGC 254574 Query 72315 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 72374 | || || ||| ||| ||| ||| ||| | || || | ||| || || Sbjct 254575 AGTCTTGCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCTTC 254634 Query 72375 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 72434 || | || | ||| || |||||||| | || ||||| | ||| || | Sbjct 254635 TGGAATTCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAAAG 254694 Query 72435 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGA 72494 ||||| | ||| || ||||| |||||| |||| || | ||| ||||||| ||| | Sbjct 254695 TGTAGGTGTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTCAAGAGCAGC 254754 Query 72495 TTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 ||| ||||| | |||||| || | || ||||||| | |||||| |||||||| Sbjct 254755 TTCAATATCACCACAATGTATACCACAAGAAACTCGCATTAGAAGATGCTGTGGTCTTTC 254814 Query 72555 AACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 72614 || | ||||||| ||| | | | |||||| |||| | ||| || || ||||||| Sbjct 254815 CACAACTTTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGTCTTGAAGGCAAAATA 254874 >seq223 Length=111419 Score = 223 bits (246), Expect = 5e-53 Identities = 581/870 (67%), Gaps = 27/870 (3%) Strand=Plus/Plus Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 |||||||||| || || | |||||||| ||||| || || |||| | ||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 41894 |||| ||||||| |||||||| |||||||| ||||| | | || || ||| | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974 Query 41895 ATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 41954 |||||| || | ||||| |||||| ||| | | ||||||| || ||||| | Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034 Query 41955 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 42014 ||| ||||||| || ||| || | | ||||| | || || |||| || || Sbjct 59035 CAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATTT 59094 Query 42015 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATG---TTTAAACATCAAACATGCGA 42071 | |||| | | | ||| | | ||| | | |||| | || || || || | Sbjct 59095 GTTGTACTCTAGA---AGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGCAA 59151 Query 42072 AATC-GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 |||| ||| || || || ||||| | || || | |||||| ||||| |||||||| ||| Sbjct 59152 AATCAGCA-TGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGGC 59210 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCC 42189 || || ||||| |||||||||||||| |||| | |||| | | |||||||| |||||||| Sbjct 59211 ATAAGTCCACGTTTTTTAAGCCAAAAAATAG-CACAAAAGCTACCAGAAAATAAGATTCC 59269 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC---ATGTATCCA 42246 ||| ||||| || |||||| |||||| || || | || || || ||||| Sbjct 59270 TTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTATCACAATTCATCCA 59326 Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 || ||||| || ||||| ||||| || | || || || | ||| || Sbjct 59327 TTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAAG 59386 Query 42307 ATAGtttttttCATTACTATCTTTAACATATGTATCGATCA--AAAGACTATACATTTCT 42364 | ||| ||| | || ||| |||| |||| || | || || ||| | || Sbjct 59387 CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGA--ATATGTCTCA 59444 Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTGGCCTCGGTAACCTG 42423 ||| || | |||||| ||||| ||||| | || | ||| ||| || || | | || Sbjct 59445 TTATGTATTTGTTCAATAGCCATTTGAAAAGCATA-ATACATTCTAGCTTCTGGTATTTG 59503 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || |||| || ||| | | || || ||||| | || || || ||||| || ||||| Sbjct 59504 TATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAA 59563 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543 ||| || | |||| ||| ||||| | | |||| | | | | | |||||| | Sbjct 59564 AAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAATCTCT 59623 Query 42544 GATATCTTTAGATATATCTACTTCTTC--TACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601 | ||||| | || ||| | |||||| || | ||||||||||||||| || |||||| Sbjct 59624 GGAATCTTGACTTAAATCAATTTCTTCAGTAAC--CCAAAATGATGCTTCAGCTTTTTTA 59681 Query 42602 TACATATTCCAGATATCATGATATTGAATT 42631 ||||| ||| ||||| | | ||| |||| Sbjct 59682 TACATTGACCAAATATCTTCA-ATTAAATT 59710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671132043978280