Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq849 163 2e-35 seq445 122 6e-23 >seq849 Length=33325 Score = 163 bits (180), Expect = 2e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | ||| || || ||||| | ||||| |||||||| || |||||||| Sbjct 19169 CCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAG 19228 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| |||| ||||||||||| || || | |||||||||||||||||| |||| Sbjct 19229 AGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGA 19288 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| ||| |||||| || ||| | || || ||||| | ||||| Sbjct 19289 ATTCCTTCCTTGTCTTGAATCTTTGCT-TTAACATTCTCGATTGTATCTGAAGGCTCTAC 19347 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || |||| |||||| |||||||| |||||| Sbjct 19348 TTCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCATA 19396 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | || || ||||| || | ||||| || ||||| || |||||||| | Sbjct 19397 CCACCTCTGAGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAT 19456 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | || |||| ||| || || ||| | |||||||||||||||||| |||| Sbjct 19457 AGAGTTCTTCCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGA 19516 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| ||| |||||| || ||| | || || ||||| | ||||| Sbjct 19517 ATTCCTTCCTTGTCTTGAATCTTTGCT-TTAACATTCTCAATTGTATCTGAAGGCTCTAC 19575 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || ||||||| |||||| |||||||| |||||| Sbjct 19576 TTCCAATGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCATA 19624 Score = 152 bits (168), Expect = 4e-32 Identities = 175/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | ||| || || ||||| | ||||| || ||||| || |||||||| Sbjct 19625 CCACCTCTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAG 19684 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| |||| ||||||||||| || || | |||||||||||||| || |||| Sbjct 19685 AGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGTGGA 19744 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| || || ||| |||||| || ||| | || || ||||| | ||||| Sbjct 19745 ATTCCTTCCTTATCTTGAATCTTTGCT-TTAACATTCTCAATTGTATCTGAAGGCTCTAC 19803 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 || || || || || || ||||||| ||| || |||||||| |||||||||| Sbjct 19804 TTCCAATGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTG 19856 >seq445 Length=134117 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | ||| | || ||||| | ||| || || || || || ||||| || | Sbjct 79446 CCACCTCTAAGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGAT 79387 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | ||||| ||||| || || || | |||| ||| ||||| || |||| Sbjct 79386 AAAGTTCTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGA 79327 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || |||||||| || ||||| ||| ||| | || ||||| ||| | || || Sbjct 79326 ATGCCCTCTTTGTCCTGGATCTTTGC-CTTAACATTCTCAATGGTGTCGGAAGGCTCAAC 79268 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || ||||| || ||||| | ||||||||||||||||||||| || Sbjct 79267 TTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATCTT 79217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362175434807673