Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq445 105 4e-18
seq849 104 1e-17
>seq445
Length=134117
Score = 105 bits (116), Expect = 4e-18
Identities = 165/235 (70%), Gaps = 6/235 (3%)
Strand=Plus/Minus
Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200
|||| ||||| | | || ||||||||| || || ||||| || || |||||||| ||||
Sbjct 79448 CACCACCTCTAAGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAG 79389
Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260
| ||| | || |||||||||||||| ||| || | ||| || || || | |
Sbjct 79388 ATAAAGTTCTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTG 79329
Query 33261 GTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317
| ||||| ||||| || | | | ||| || || | | ||| |||||| || |
Sbjct 79328 GAATGCCCTCTTTGTCCTGGATCTTTGCC---TTAACATTCTCAATGGTGTCGGAAGGCT 79272
Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
||| |||| || || || ||||| || | ||||||||| ||||||||||| ||
Sbjct 79271 CAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATCTT 79217
>seq849
Length=33325
Score = 104 bits (114), Expect = 1e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| | | ||| |||||||| || || || |||||||| ||||||||||||||
Sbjct 19169 CCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAG 19228
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
| | | | ||| || ||||| ||||| ||| || |||||||| ||||| | ||
Sbjct 19229 AGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGA 19288
Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322
|| ||||| || || |||| ||| || | | || || || || | ||
Sbjct 19289 ATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTACT 19348
Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|||| ||||| || |||||||| | |||||| || ||||| |||||
Sbjct 19349 TCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/232 (68%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| ||||| | | ||| |||||||| || || || || ||||| ||||||||||||||
Sbjct 19624 ACCACCTCTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCAGA 19683
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
| | | | ||| || ||||| || || ||| || |||||||| || || | ||
Sbjct 19684 GAGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGTGG 19743
Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321
|| ||||| || || |||| ||| || | | ||| || || || | ||
Sbjct 19744 AATTCCTTCCTTATCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTAC 19803
Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373
|||| || || || ||||| || | ||| || || ||||| ||||| |||
Sbjct 19804 TTCCAATGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTT 19855
Score = 84.2 bits (92), Expect = 1e-11
Identities = 159/232 (69%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| ||||| | || ||| || || || || || || || ||||| |||||||||||||
Sbjct 19396 ACCACCTCTGAGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAG- 19454
Query 33202 CAAATTGAGTTGGT-CATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257
|| ||||| | ||||| | ||||||||| || || |||||||| ||||| |
Sbjct 19455 ---ATAGAGTTCTTCCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGG 19511
Query 33258 TGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317
|| || ||||| || || |||| ||| || | | ||| || || || |
Sbjct 19512 GTGGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCT 19571
Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| |||| || || || ||||| || | |||||| || ||||| |||||
Sbjct 19572 CTACTTCCAATGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318774286007994
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |