Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq445 105 4e-18 seq849 104 1e-17 >seq445 Length=134117 Score = 105 bits (116), Expect = 4e-18 Identities = 165/235 (70%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||| | | || ||||||||| || || ||||| || || |||||||| |||| Sbjct 79448 CACCACCTCTAAGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAG 79389 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | ||| | || |||||||||||||| ||| || | ||| || || || | | Sbjct 79388 ATAAAGTTCTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTG 79329 Query 33261 GTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 | ||||| ||||| || | | | ||| || || | | ||| |||||| || | Sbjct 79328 GAATGCCCTCTTTGTCCTGGATCTTTGCC---TTAACATTCTCAATGGTGTCGGAAGGCT 79272 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||| |||| || || || ||||| || | ||||||||| ||||||||||| || Sbjct 79271 CAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATCTT 79217 >seq849 Length=33325 Score = 104 bits (114), Expect = 1e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | | ||| |||||||| || || || |||||||| |||||||||||||| Sbjct 19169 CCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAG 19228 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | | ||| || ||||| ||||| ||| || |||||||| ||||| | || Sbjct 19229 AGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGA 19288 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || ||||| || || |||| ||| || | | || || || || | || Sbjct 19289 ATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTACT 19348 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||||| || |||||||| | |||||| || ||||| ||||| Sbjct 19349 TCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | | ||| |||||||| || || || || ||||| |||||||||||||| Sbjct 19624 ACCACCTCTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCAGA 19683 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | ||| || ||||| || || ||| || |||||||| || || | || Sbjct 19684 GAGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGTGG 19743 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || |||| ||| || | | ||| || || || | || Sbjct 19744 AATTCCTTCCTTATCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTAC 19803 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 |||| || || || ||||| || | ||| || || ||||| ||||| ||| Sbjct 19804 TTCCAATGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTT 19855 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || ||| || || || || || || || ||||| ||||||||||||| Sbjct 19396 ACCACCTCTGAGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAG- 19454 Query 33202 CAAATTGAGTTGGT-CATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 || ||||| | ||||| | ||||||||| || || |||||||| ||||| | Sbjct 19455 ---ATAGAGTTCTTCCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGG 19511 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 || || ||||| || || |||| ||| || | | ||| || || || | Sbjct 19512 GTGGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCT 19571 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| || || || ||||| || | |||||| || ||||| ||||| Sbjct 19572 CTACTTCCAATGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318774286007994