Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq445 96.9 3e-15 seq849 89.7 4e-13 >seq445 Length=134117 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053 |||| ||||||||||| ||||| || || || || ||||| || | |||| | | Sbjct 79434 CTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGATAAAGTTCTGCCA 79375 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 ||||||||||| || || ||| | || || | ||||||||| || | ||| |||||| Sbjct 79374 TCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGAATGCCCTCTTTG 79315 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || || ||| || || | ||| | ||| ||| || ||||| || ||| Sbjct 79314 TCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACTTCCAATGTGATG 79255 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || || || || || ||||| |||||||||||||| || Sbjct 79254 GTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATCTT 79217 >seq849 Length=33325 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| | ||||| |||||||||| || ||||||||||| || |||||||| Sbjct 19167 TTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAG 19226 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | || || |||||||| || ||| | || | | ||||| ||| | Sbjct 19227 AGAGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTG 19286 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| ||||| ||| ||| ||| || | | | | ||| ||| || Sbjct 19287 GAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTA 19346 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || || || || || ||||| ||||| |||||||| ||||| Sbjct 19347 CTTCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419582837997693