Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq223 185 7e-42 >seq223 Length=111419 Score = 185 bits (204), Expect = 7e-42 Identities = 577/869 (66%), Gaps = 47/869 (5%) Strand=Plus/Plus Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 |||| ||||| | |||||| ||||| || || |||||||| |||| | |||||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 12921 CCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT----ACACCCTAATTCTAGT 12976 |||| |||| |||||||| | ||| || ||| |||| ||| | ||| | | Sbjct 58915 CCATCCAATCAAAAGGATTGGTG--ACATTA-TATATTTTGGGGACATC-TAAAGCAAAA 58970 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC-AGTTCATTCCTAT 13035 | | ||| ||||| ||||| || || || || ||| || || | ||||| || || Sbjct 58971 AGTAGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTGGAATTCATACCAAT 59029 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTC---GAT 13092 | | ||||| | || || | |||||| |||| | |||||| ||||| ||| Sbjct 59030 AAGATCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGAT 59089 Query 13093 AACTA--TGT-CTCTT--ATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATC 13147 | | ||| |||| | | || | ||| |||| | | | ||| | || Sbjct 59090 GATTTGTTGTACTCTAGAAGTTGGTAGTTTAA------ATTTAAGGGCT--TTATAGATT 59141 Query 13148 ATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTT 13207 | || ||||||||| || | ||||||||| | || || || ||||||||||| || Sbjct 59142 AAGCAAGCAAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTG 59201 Query 13208 AGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaa 13267 || || |||||||| || |||||||||| |||||| |||||| ||| ||| ||||| Sbjct 59202 AGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAAT 59261 Query 13268 aaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTC 13327 || |||||||||||||| || | || | || ||| || | | ||| | || Sbjct 59262 AAGATTCCTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTA---TCACAA 59318 Query 13328 TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGC 13386 | ||||| || | ||||| | ||| |||| |||||| || | |||| ||||| Sbjct 59319 TTCATCCATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTG-AAATATGAGAGATTGC 59377 Query 13387 GTTAAATAAATAAttt--ttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA 13444 | || ||| |||| ||| ||| | || |||| ||||||||||| || | Sbjct 59378 TTCAA--AAAGCATTTGACGTTCTTTAATTTCAGTAATA----TATCTATCAATGAGTAA 59431 Query 13445 T--ACATTTCTGA--ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 | | || ||| | ||| || | ||| || || ||||| ||| ||||| | |||||| Sbjct 59432 TGAATATGTCTCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGC 59491 Query 13501 CTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGT 13559 |||| || || | ||| | ||||| || | || |||||||| |||| || || | Sbjct 59492 TTCTGGTATTTGTATTTCTCTAAGAAAAT-TTACCGCCAAGTTTTCCATAACAATACCAT 59550 Query 13560 CACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC-GTTTTCTGACAAC 13618 |||| ||||||||||| || || | | || ||||| | | |||| | | | | || Sbjct 59551 CACTTGCAGCAAAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGAC 59610 Query 13619 TTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCA 13678 ||| ||||||| |||||| |||||| | || ||| |||||| || || Sbjct 59611 TTT-CCCAATCTCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCT 59669 Query 13679 ACAGCCTTCTTATACATCATCCATATATC 13707 |||| || |||||||| ||| ||||| Sbjct 59670 TCAGCTTTTTTATACATTGACCAAATATC 59698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430977919533906