Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq849 100 3e-16 >seq849 Length=33325 Score = 100 bits (110), Expect = 3e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || ||||| | | ||| || ||||| ||||| ||||||||||| | Sbjct 19384 AAAAATCTGCATACCACCTCTGAGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGAT 19443 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || ||||| | ||| | |||||| || || ||||| | ||||| || | ||| Sbjct 19444 ATTGTAATCAGATAGAGTTCTTCCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTG 19503 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || || || ||||| ||||| ||||| | ||| ||||| || || | | || || Sbjct 19504 TTGGTCGGGTGGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCAATTGTATC 19563 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||| || ||||| || | |||||| ||||| |||||||| Sbjct 19564 TGAAGGCTCTACTTCCAATGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || ||||| | || ||| ||||| || ||||| ||||||||||| | Sbjct 19612 AAAAATCTGCATACCACCTCTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGAT 19671 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || ||||| | ||| | ||||| | ||||| || ||||||| || | ||| Sbjct 19672 ATTGTAATCAGAGAGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTG 19731 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||| || ||||| ||||| || || | ||| ||||| || || | | || || Sbjct 19732 TTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACATTCTCAATTGTATC 19791 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||| || ||||| || | ||| || ||||| |||||||| Sbjct 19792 TGAAGGCTCTACTTCCAATGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 19851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448286420095080