Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq645 141 1e-29 >seq645 Length=49751 Score = 141 bits (156), Expect = 1e-29 Identities = 194/270 (72%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | ||| || ||||| |||||||| ||||| |||||||| ||| Sbjct 40981 GCCAAGCGTCATCGTAAGGTTCTCCGTGATAATATCCAAGGTATCACAAAGCCAGCCATC 41040 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||| | ||||| || || ||| |||| | ||| |||| ||||| | Sbjct 41041 CGTCGTCTCGCACGTAGAGGTGGTGTTAAACGTATCTCCGCCTTGATCTACGAAGAAGTC 41100 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| |||||| ||| | | |||||||| | |||||| || ||| || ||| Sbjct 41101 AGAGGTGTATTGAAGGCATTCTTGGAAACCGTTATTAAGGATGCTGTCACCTACACTGAG 41160 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 | || | ||||||||||| || | |||||| | || |||| | || | |||||| Sbjct 41161 TATGCCAGGCGTAAGACTGTTACAGCTATGGATGTAGTTCATGCTCTCAAGAGACAAGGC 41220 Query 16673 CGTAAGA---TTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 41221 ---AAGACTTTGTACGGTTTTGGTGGTTAA 41247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074420096129