Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq645 141 1e-29
>seq645
Length=49751
Score = 141 bits (156), Expect = 1e-29
Identities = 194/270 (72%), Gaps = 6/270 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||| | ||| || ||||| |||||||| ||||| |||||||| |||
Sbjct 40981 GCCAAGCGTCATCGTAAGGTTCTCCGTGATAATATCCAAGGTATCACAAAGCCAGCCATC 41040
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| || ||| | ||||| || || ||| |||| | ||| |||| ||||| |
Sbjct 41041 CGTCGTCTCGCACGTAGAGGTGGTGTTAAACGTATCTCCGCCTTGATCTACGAAGAAGTC 41100
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
| | ||| |||||| ||| | | |||||||| | |||||| || ||| || |||
Sbjct 41101 AGAGGTGTATTGAAGGCATTCTTGGAAACCGTTATTAAGGATGCTGTCACCTACACTGAG 41160
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
| || | ||||||||||| || | |||||| | || |||| | || | ||||||
Sbjct 41161 TATGCCAGGCGTAAGACTGTTACAGCTATGGATGTAGTTCATGCTCTCAAGAGACAAGGC 41220
Query 16673 CGTAAGA---TTTATGGTTTTGGAAGTTAA 16699
|||| | || |||||||| |||||
Sbjct 41221 ---AAGACTTTGTACGGTTTTGGTGGTTAA 41247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074420096129
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |