Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq223 136 4e-27 >seq223 Length=111419 Score = 136 bits (150), Expect = 4e-27 Identities = 557/861 (65%), Gaps = 31/861 (4%) Strand=Plus/Plus Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 |||| || || | |||||| |||||||| |||||||| || |||| | ||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 21246 CCATAAAATCAAATGGATTT-TCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 |||| ||||||| ||||| | | ||| | ||||||| | | | | | | | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATT-ATATATTTTGGGGACATCTAAAGCAAAAAGT 58973 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 | |||||| ||||||||||| ||||||||| ||| | | |||||||||| || | Sbjct 58974 AGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGA 59033 Query 21365 TTTACAGGAAGAGCTTTTGTCAAA-AAAGATT-TTTCTATAGAGACGGCTTCAACAATTA 21422 | |||||||||| | |||| ||| || |||| | | || ||||| || | Sbjct 59034 TCAACAGGAAGAG--AATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGA 59091 Query 21423 TATTTATTATCCTAGATGTACTAGGGGGATACAATAATTG--TTTAAACATCAAACATGC 21480 | | | || ||||| || | | | || | | | | |||| | || || || || Sbjct 59092 TTTGTTGTACTCTAGAAGT--TGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGC 59149 Query 21481 AAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGG 21540 ||||||| ||| | |||||||| | || || | ||| || ||||| || | || || Sbjct 59150 AAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGG 59209 Query 21541 CATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGC 21599 ||| | ||| | ||||| | |||||| || | | |||| ||| || ||||| || || | Sbjct 59210 CATAAGTCCACGTTTTTTAAGCCAAAAAATAG-CACAAAAGCTACCAGAAAATAAGATTC 59268 Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATC-CAAT--A 21656 | ||||| ||| ||| ||| | || ||| | | ||| | |||| |||| | Sbjct 59269 CTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAA---AGA---TCTATCACAATTCA 59322 Query 21657 TCCATTTTTCTGCCCATTTTGCCTTTTCTTTAA-TACAATCAATTGT-ATCAATAGCTTT 21714 ||||||| |||||| | |||||||| ||||| | | | || | | | || |||| Sbjct 59323 TCCATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGC--TGAAATATGAGAGATTGCTTC 59380 Query 21715 TAAAAGATGAttt--ttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATAC 21772 ||||| |||| ||| | | || || || ||| Sbjct 59381 AAAAAG--CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGAATAT 59438 Query 21773 ATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAA 21832 | ||| |||||| | ||| || || || ||||| | ||| | ||| || |||| Sbjct 59439 GTCTCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTGGT 59498 Query 21833 CATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGC 21891 ||| | || || ||||| | ||||||||||| | || || |||||||| || Sbjct 59499 ATTTGTATTTCTCTAAGAAAAT-TTACCGCCAAGTTTTCCATAACAATACCATCACTTGC 59557 Query 21892 GGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCA 21951 |||||||| || | | || ||| ||||| | || ||| |||| | | ||| ||| Sbjct 59558 AGCAAAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCA 59617 Query 21952 ATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTT 22011 |||| |||||| |||||| | ||||||||| |||||| || ||| || Sbjct 59618 ATCTCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTT 59677 Query 22012 TTTATACATAATCCAGATATC 22032 ||||||||| ||| ||||| Sbjct 59678 TTTATACATTGACCAAATATC 59698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531895128607720