Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq290 289 4e-73 seq223 223 4e-53 >seq290 Length=478353 Score = 289 bits (320), Expect = 4e-73 Identities = 1150/1800 (64%), Gaps = 36/1800 (2%) Strand=Plus/Plus Query 62033 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62092 ||| || || || ||||||| ||| |||| || ||||||||||| | || || Sbjct 253087 ATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTT 253146 Query 62093 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62152 | | | | | || | | ||||| ||||||| ||| ||| ||| | | | || Sbjct 253147 TGCAAAGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGACC 253206 Query 62153 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 62211 ||| ||||||||||| | || | ||||||||| ||||||||||| ||| ||||||| Sbjct 253207 CCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 253266 Query 62212 CTCGCTTAATATCTTCTGGAA-GGTTTGTA--TTCTGAATGGATCCACCATCTGCCATAA 62268 ||| | | ||||||||||||| || ||| || ||||| |||| || ||| || | Sbjct 253267 CTCACGT-ATATCTTCTGGAATTGTAGGTATGTTTTGAATACTTCCATTATTTGCAATTA 253325 Query 62269 TCCTATTCTTGATCTCATCATTCCATAAT----TTTCTCTCGGTTAAAACTCTAAGGAGA 62324 | | | ||| | | ||||| ||||||| |||| | ||| | | || | | Sbjct 253326 TATTTTGCTTAAGCCTATCATCCCATAATCCAAGTTCTAAC----AAATCATTTAGTAAA 253381 Query 62325 TGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 62384 || || || ||||| ||||| ||||| | || || ||| |||||||| ||| Sbjct 253382 TGTGGGTTCACTACAAAGAATTCACCAGATAGCACCCTACGATGATAAATATTTGAAGTA 253441 Query 62385 TACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 62444 | || || | |||||| || || ||||| || | ||| || ||||| ||||| || Sbjct 253442 AAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCATTGGA 253501 Query 62445 GCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAA 62504 | | || | | ||| | || || || | |||| | ||||| || | ||||| Sbjct 253502 GATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAATCCCAG 253561 Query 62505 TTCCAAAGATCCGA---CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTG 62561 | ||||| | || ||| ||| ||| | ||||| ||||| Sbjct 253562 TCACAAAGCCCAGAATCTGGTGTAACTCCCCACATATCAAATTGCAAGATACCTTTACTC 253621 Query 62562 GCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCC 62621 || ||||| ||||| |||||||| || || || || || || ||||| || ||| Sbjct 253622 GCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGCTAGCC 253681 Query 62622 TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGG 62681 || | || ||||||| || ||| || || | ||||| || | || |||| Sbjct 253682 TCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTTTATCT 253741 Query 62682 CTATCAAATGG-ATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATAC 62739 ||| | || ||| ||| | ||||| |||||| | ||||| || || || | Sbjct 253742 GAGTCATACGGCATA--CGAAGCATCATAAAGCAGTCCGCGAGCCCTTGGACGCCGATTC 253799 Query 62740 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 62799 | | || | |||||| ||| || ||| | |||||| | | ||| || || | Sbjct 253800 CCAACGGACGATGTCTTAGATTTGAATTTTTACATTCTGGGAGGGAATAGTACCCAAAGT 253859 Query 62800 CTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT 62859 | | | |||||| | ||| || ||| || || || ||||| | ||| ||||| Sbjct 253860 CAACTACTTTATTTAAATTCCTCGTAATCACCTTCGTAACTTCCTTTAACTTGTCAAAAT 253919 Query 62860 CAAA---TCGCCCATCTATTACAAACATGTTC---AAGGCAACAGATGCCAGATTACAAA 62913 ||| | |||| | ||| | ||| || | | ||||||||||||||||| Sbjct 253920 TAAATGTTTTGTTATCTTTATCAACGAACTTCGGTAACCCGATAGATGCCAGATTACAAA 253979 Query 62914 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 62973 | || | |||| || | |||| ||||| || ||||| | ||||| | | Sbjct 253980 CTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTACTTGAGACAA 254039 Query 62974 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63033 ||||||| ||||| | ||| ||||| || | || |||||||||||| ||| |||| Sbjct 254040 TAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCAGCATCCTTATAACAAATAAATG 254099 Query 63034 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 63093 | || || |||||||| |||| | | || ||| | | | || || || Sbjct 254100 GCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAACCAAAGTTTTTGCGCTTTCATGG 254159 Query 63094 TAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTC--GAACTCGTCTCC 63151 | | | | || || | |||||||| | |||||| ||| ||||| || || Sbjct 254160 TCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGTACAAT--TTCCTAAACTCATCACC 254217 Query 63152 CCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 63211 |||||||| | |||||| || || ||||| |||||||| | ||| ||| | ||| Sbjct 254218 CCAAACATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTCCAATCT---TGATC 254274 Query 63212 CTT---CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 63268 ||| || | | |||||| |||||||||| |||||| || ||| || || | Sbjct 254275 CTTTTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGACA 254334 Query 63269 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63328 ||| || || ||||| || ||| ||| || | ||| | | || || |||| Sbjct 254335 TCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAAATG 254394 Query 63329 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63388 ||| |||||||| || || || ||| | || ||||| || || ||||| || || Sbjct 254395 CCATGGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATATA 254454 Query 63389 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63448 ||||| || | ||||||||| | || ||||||||| | || || || | |||||||| Sbjct 254455 CCTAGCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTGGT 254514 Query 63449 ACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGC 63508 || ||||| ||| | | | ||||||||| | || | || | || ||||| Sbjct 254515 TCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCTGC 254574 Query 63509 CATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATC 63568 | || || ||| ||| ||| ||||||| | ||||| | ||| || || Sbjct 254575 AGTCTTGCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCTTC 254634 Query 63569 GATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 63628 || | || | ||| || |||||||| | || ||||| | ||| || | Sbjct 254635 TGGAATTCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAAAG 254694 Query 63629 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63688 ||||| | ||| || ||||| |||||| || | || | ||| ||||||| ||| | Sbjct 254695 TGTAGGTGTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTCAAGAGCAGC 254754 Query 63689 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 || ||||| | ||| || || | || ||||||| | ||||| |||||||| Sbjct 254755 TTCAATATCACCACAATGTATACCACAAGAAACTCGCATTAGAAGATGCTGTGGTCTTTC 254814 Query 63749 AACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63808 || | ||||| | ||| | | | |||||| |||| | ||| || || ||||||| Sbjct 254815 CACAACTTTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGTCTTGAAGGCAAAATA 254874 >seq223 Length=111419 Score = 223 bits (246), Expect = 4e-53 Identities = 564/844 (67%), Gaps = 24/844 (3%) Strand=Plus/Plus Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 |||||||||| || || | |||||||| ||||| ||||| |||| | ||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 33133 |||| ||||||| |||||||| |||||||| ||||| | | || || ||| | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974 Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 33193 |||||| || || ||||| |||||| ||| | | ||||||| || ||||| | Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034 Query 33194 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 33253 ||| ||||||| || ||| || | | ||||| || || |||| || || Sbjct 59035 CAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATTT 59094 Query 33254 ATCTAACGGTTTCTTCAC-TCGGTGGATGCAATAAATG---TTTAAACATCAAACATGCG 33309 | || ||| | | ||| | | ||| | | |||| | || || || || Sbjct 59095 GTTGTAC----TCTAGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGCA 59150 Query 33310 AAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 33368 ||||| ||| || || || || || | || || |||||||| ||||| |||||||| || Sbjct 59151 AAATCAGCA-TGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGG 59209 Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAAGATTC 33427 ||| || ||||| |||||||||||||| || | | | || | | |||||||| ||||||| Sbjct 59210 CATAAGTCCACGTTTTTTAAGCCAAAAAATAGCA-CAAAAGCTACCAGAAAATAAGATTC 59268 Query 33428 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC---ATGTATCC 33484 |||| |||||| || |||||| |||||| || || | || || || |||| Sbjct 59269 CTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTATCACAATTCATCC 59325 Query 33485 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33544 | || ||||| || ||||| ||||| || | || || || | ||| | Sbjct 59326 ATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAA 59385 Query 33545 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTC 33602 | | ||| ||| | || ||| ||| |||| || | || || ||| | || Sbjct 59386 GCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGA--ATATGTCTC 59443 Query 33603 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCT 33661 ||| || | |||||| ||||| ||||| | || | ||| |||||| || | || | Sbjct 59444 ATTATGTATTTGTTCAATAGCCATTTGAAAAGCATA-ATACATTCTAGCTTCTGGTATTT 59502 Query 33662 GTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 33721 ||| |||| || ||| | ||||||| ||||| | || || || ||||| || |||| Sbjct 59503 GTATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAA 59562 Query 33722 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 33781 |||| || | |||| ||| ||||| | | |||| | | || | | |||||| Sbjct 59563 AAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAATCTC 59622 Query 33782 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33841 || ||||| | || ||| | |||||| |||||||||||| || || ||||||| Sbjct 59623 TGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTAT 59682 Query 33842 ACAT 33845 |||| Sbjct 59683 ACAT 59686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622940557825480