Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq290 289 4e-73
seq223 223 4e-53
>seq290
Length=478353
Score = 289 bits (320), Expect = 4e-73
Identities = 1150/1800 (64%), Gaps = 36/1800 (2%)
Strand=Plus/Plus
Query 62033 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62092
||| || || || ||||||| ||| |||| || ||||||||||| | || ||
Sbjct 253087 ATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTT 253146
Query 62093 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62152
| | | | | || | | ||||| ||||||| ||| ||| ||| | | | ||
Sbjct 253147 TGCAAAGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGACC 253206
Query 62153 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 62211
||| ||||||||||| | || | ||||||||| ||||||||||| ||| |||||||
Sbjct 253207 CCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 253266
Query 62212 CTCGCTTAATATCTTCTGGAA-GGTTTGTA--TTCTGAATGGATCCACCATCTGCCATAA 62268
||| | | ||||||||||||| || ||| || ||||| |||| || ||| || |
Sbjct 253267 CTCACGT-ATATCTTCTGGAATTGTAGGTATGTTTTGAATACTTCCATTATTTGCAATTA 253325
Query 62269 TCCTATTCTTGATCTCATCATTCCATAAT----TTTCTCTCGGTTAAAACTCTAAGGAGA 62324
| | | ||| | | ||||| ||||||| |||| | ||| | | || | |
Sbjct 253326 TATTTTGCTTAAGCCTATCATCCCATAATCCAAGTTCTAAC----AAATCATTTAGTAAA 253381
Query 62325 TGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 62384
|| || || ||||| ||||| ||||| | || || ||| |||||||| |||
Sbjct 253382 TGTGGGTTCACTACAAAGAATTCACCAGATAGCACCCTACGATGATAAATATTTGAAGTA 253441
Query 62385 TACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 62444
| || || | |||||| || || ||||| || | ||| || ||||| ||||| ||
Sbjct 253442 AAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCATTGGA 253501
Query 62445 GCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAA 62504
| | || | | ||| | || || || | |||| | ||||| || | |||||
Sbjct 253502 GATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAATCCCAG 253561
Query 62505 TTCCAAAGATCCGA---CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTG 62561
| ||||| | || ||| ||| ||| | ||||| |||||
Sbjct 253562 TCACAAAGCCCAGAATCTGGTGTAACTCCCCACATATCAAATTGCAAGATACCTTTACTC 253621
Query 62562 GCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCC 62621
|| ||||| ||||| |||||||| || || || || || || ||||| || |||
Sbjct 253622 GCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGCTAGCC 253681
Query 62622 TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGG 62681
|| | || ||||||| || ||| || || | ||||| || | || ||||
Sbjct 253682 TCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTTTATCT 253741
Query 62682 CTATCAAATGG-ATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATAC 62739
||| | || ||| ||| | ||||| |||||| | ||||| || || || |
Sbjct 253742 GAGTCATACGGCATA--CGAAGCATCATAAAGCAGTCCGCGAGCCCTTGGACGCCGATTC 253799
Query 62740 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 62799
| | || | |||||| ||| || ||| | |||||| | | ||| || || |
Sbjct 253800 CCAACGGACGATGTCTTAGATTTGAATTTTTACATTCTGGGAGGGAATAGTACCCAAAGT 253859
Query 62800 CTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT 62859
| | | |||||| | ||| || ||| || || || ||||| | ||| |||||
Sbjct 253860 CAACTACTTTATTTAAATTCCTCGTAATCACCTTCGTAACTTCCTTTAACTTGTCAAAAT 253919
Query 62860 CAAA---TCGCCCATCTATTACAAACATGTTC---AAGGCAACAGATGCCAGATTACAAA 62913
||| | |||| | ||| | ||| || | | |||||||||||||||||
Sbjct 253920 TAAATGTTTTGTTATCTTTATCAACGAACTTCGGTAACCCGATAGATGCCAGATTACAAA 253979
Query 62914 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 62973
| || | |||| || | |||| ||||| || ||||| | ||||| | |
Sbjct 253980 CTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTACTTGAGACAA 254039
Query 62974 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63033
||||||| ||||| | ||| ||||| || | || |||||||||||| ||| ||||
Sbjct 254040 TAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCAGCATCCTTATAACAAATAAATG 254099
Query 63034 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 63093
| || || |||||||| |||| | | || ||| | | | || || ||
Sbjct 254100 GCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAACCAAAGTTTTTGCGCTTTCATGG 254159
Query 63094 TAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTC--GAACTCGTCTCC 63151
| | | | || || | |||||||| | |||||| ||| ||||| || ||
Sbjct 254160 TCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGTACAAT--TTCCTAAACTCATCACC 254217
Query 63152 CCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 63211
|||||||| | |||||| || || ||||| |||||||| | ||| ||| | |||
Sbjct 254218 CCAAACATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTCCAATCT---TGATC 254274
Query 63212 CTT---CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 63268
||| || | | |||||| |||||||||| |||||| || ||| || || |
Sbjct 254275 CTTTTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGACA 254334
Query 63269 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63328
||| || || ||||| || ||| ||| || | ||| | | || || ||||
Sbjct 254335 TCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAAATG 254394
Query 63329 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63388
||| |||||||| || || || ||| | || ||||| || || ||||| || ||
Sbjct 254395 CCATGGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATATA 254454
Query 63389 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63448
||||| || | ||||||||| | || ||||||||| | || || || | ||||||||
Sbjct 254455 CCTAGCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTGGT 254514
Query 63449 ACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGC 63508
|| ||||| ||| | | | ||||||||| | || | || | || |||||
Sbjct 254515 TCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCTGC 254574
Query 63509 CATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATC 63568
| || || ||| ||| ||| ||||||| | ||||| | ||| || ||
Sbjct 254575 AGTCTTGCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCTTC 254634
Query 63569 GATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 63628
|| | || | ||| || |||||||| | || ||||| | ||| || |
Sbjct 254635 TGGAATTCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAAAG 254694
Query 63629 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63688
||||| | ||| || ||||| |||||| || | || | ||| ||||||| ||| |
Sbjct 254695 TGTAGGTGTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTCAAGAGCAGC 254754
Query 63689 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748
|| ||||| | ||| || || | || ||||||| | ||||| ||||||||
Sbjct 254755 TTCAATATCACCACAATGTATACCACAAGAAACTCGCATTAGAAGATGCTGTGGTCTTTC 254814
Query 63749 AACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63808
|| | ||||| | ||| | | | |||||| |||| | ||| || || |||||||
Sbjct 254815 CACAACTTTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGTCTTGAAGGCAAAATA 254874
>seq223
Length=111419
Score = 223 bits (246), Expect = 4e-53
Identities = 564/844 (67%), Gaps = 24/844 (3%)
Strand=Plus/Plus
Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073
|||||||||| || || | |||||||| ||||| ||||| |||| | ||| ||| |
Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914
Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 33133
|||| ||||||| |||||||| |||||||| ||||| | | || || ||| |
Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974
Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 33193
|||||| || || ||||| |||||| ||| | | ||||||| || ||||| |
Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034
Query 33194 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 33253
||| ||||||| || ||| || | | ||||| || || |||| || ||
Sbjct 59035 CAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATTT 59094
Query 33254 ATCTAACGGTTTCTTCAC-TCGGTGGATGCAATAAATG---TTTAAACATCAAACATGCG 33309
| || ||| | | ||| | | ||| | | |||| | || || || ||
Sbjct 59095 GTTGTAC----TCTAGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGCA 59150
Query 33310 AAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 33368
||||| ||| || || || || || | || || |||||||| ||||| |||||||| ||
Sbjct 59151 AAATCAGCA-TGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGG 59209
Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAAGATTC 33427
||| || ||||| |||||||||||||| || | | | || | | |||||||| |||||||
Sbjct 59210 CATAAGTCCACGTTTTTTAAGCCAAAAAATAGCA-CAAAAGCTACCAGAAAATAAGATTC 59268
Query 33428 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC---ATGTATCC 33484
|||| |||||| || |||||| |||||| || || | || || || ||||
Sbjct 59269 CTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTATCACAATTCATCC 59325
Query 33485 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33544
| || ||||| || ||||| ||||| || | || || || | ||| |
Sbjct 59326 ATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAA 59385
Query 33545 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTC 33602
| | ||| ||| | || ||| ||| |||| || | || || ||| | ||
Sbjct 59386 GCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGA--ATATGTCTC 59443
Query 33603 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCT 33661
||| || | |||||| ||||| ||||| | || | ||| |||||| || | || |
Sbjct 59444 ATTATGTATTTGTTCAATAGCCATTTGAAAAGCATA-ATACATTCTAGCTTCTGGTATTT 59502
Query 33662 GTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 33721
||| |||| || ||| | ||||||| ||||| | || || || ||||| || ||||
Sbjct 59503 GTATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAA 59562
Query 33722 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 33781
|||| || | |||| ||| ||||| | | |||| | | || | | ||||||
Sbjct 59563 AAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAATCTC 59622
Query 33782 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33841
|| ||||| | || ||| | |||||| |||||||||||| || || |||||||
Sbjct 59623 TGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTAT 59682
Query 33842 ACAT 33845
||||
Sbjct 59683 ACAT 59686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622940557825480
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