Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq445 116 4e-21 seq849 102 8e-17 seq290 84.2 2e-11 >seq445 Length=134117 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || |||||| | ||||||||||| ||||| ||||| | ||||| | ||| | || | Sbjct 79217 AAGATGCAAATTTTTGTAAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCT 79276 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||| ||| | || || |||||| |||||||| || || || || ||| Sbjct 79277 TCCGACACCATTGAGAATGTTAAGGCAAAGATCCAGGACAAAGAGGGCATTCCACCTGAT 79336 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944 ||||| | || || | | || || ||| | ||||||| || ||| | | | ||||| Sbjct 79337 CAACAGCGTCTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAG-AACTTTATCTGACTA 79395 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || ||||| | ||| |||| |||||||||||||| || Sbjct 79396 CAATATTCAGAAGGAGTCTACCTTACATTTGGTGCTGAGACTTAGAGGTGG 79446 >seq849 Length=33325 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || ||||| | || || | ||| |||| | Sbjct 19395 ATGCAGATTTTTGTTAAAACTTTGACGGGAAAGACTATAACATTGGAAGTAGAGCCTTCA 19336 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || |||||| | || ||| ||||||| ||||| ||||| || || ||||| ||| Sbjct 19335 GATACAATCGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAA 19276 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | | || |||||| | || || | |||| || || || || Sbjct 19275 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAAT 19216 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || ||||||||||| ||| | ||| |||| ||||||||||||| |||| Sbjct 19215 ATCCAAAAAGAATCCACTTTACATTTGGTATTGAGACTTAGAGGTGGAA 19167 >seq290 Length=478353 Score = 84.2 bits (92), Expect = 2e-11 Identities = 192/287 (67%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 147114 ACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTT 147173 || || ||||| || | | || |||| || ||||||||||| || ||||| |||||| Sbjct 253046 ACAGTAAATTGTATAGGGCGTGTTGCGCTTTGAGTTCTCAAATAATAAATGCCGGTTTTT 253105 Query 147174 AAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTT--ATAGGTTGGATTGG 147231 ||||| |||| |||| ||| || || |||||| |||||| | || | | ||| Sbjct 253106 AAACCTTTTTTCCAACCATAAAAATGCATCGATGAT--AACTTTGCAAAGTTGGCATTTT 253163 Query 147232 CCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATGT 147291 ||| | || ||| | || || || | || || |||| ||||| ||||| | Sbjct 253164 CCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGACCCCTATCTGCAGCCATAT 253223 Query 147292 CCAACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTGTG 147351 | | ||| ||||| |||||||||||| | ||||| | ||| | |||| | || Sbjct 253224 CAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAGCTCACGTATATCTTCTG 253283 Query 147352 GAATTTCATCAATATTTTGTACAGATCCGTTGTTTTTAATAATTTTT 147398 ||||| | || ||||| | | ||| || ||| ||| || ||| Sbjct 253284 GAATTGTAGGTATGTTTTGAATACTTCCATTATTTGCAATTATATTT 253330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478657296262160