Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq445 116 4e-21
seq849 102 8e-17
seq290 84.2 2e-11
>seq445
Length=134117
Score = 116 bits (128), Expect = 4e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| |||||| | ||||||||||| ||||| ||||| | ||||| | ||| | || |
Sbjct 79217 AAGATGCAAATTTTTGTAAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCT 79276
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
||||||||| ||| | || || |||||| |||||||| || || || || |||
Sbjct 79277 TCCGACACCATTGAGAATGTTAAGGCAAAGATCCAGGACAAAGAGGGCATTCCACCTGAT 79336
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944
||||| | || || | | || || ||| | ||||||| || ||| | | | |||||
Sbjct 79337 CAACAGCGTCTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAG-AACTTTATCTGACTA 79395
Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| ||||| || || ||||| | ||| |||| |||||||||||||| ||
Sbjct 79396 CAATATTCAGAAGGAGTCTACCTTACATTTGGTGCTGAGACTTAGAGGTGG 79446
>seq849
Length=33325
Score = 102 bits (112), Expect = 8e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| ||||| || || ||||| | || || | ||| |||| |
Sbjct 19395 ATGCAGATTTTTGTTAAAACTTTGACGGGAAAGACTATAACATTGGAAGTAGAGCCTTCA 19336
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| || |||||| | || ||| ||||||| ||||| ||||| || || ||||| |||
Sbjct 19335 GATACAATCGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAA 19276
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| | | || | | || |||||| | || || | |||| || || || ||
Sbjct 19275 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAAT 19216
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
|| ||||||||||| ||| | ||| |||| ||||||||||||| ||||
Sbjct 19215 ATCCAAAAAGAATCCACTTTACATTTGGTATTGAGACTTAGAGGTGGAA 19167
>seq290
Length=478353
Score = 84.2 bits (92), Expect = 2e-11
Identities = 192/287 (67%), Gaps = 4/287 (1%)
Strand=Plus/Plus
Query 147114 ACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTT 147173
|| || ||||| || | | || |||| || ||||||||||| || ||||| ||||||
Sbjct 253046 ACAGTAAATTGTATAGGGCGTGTTGCGCTTTGAGTTCTCAAATAATAAATGCCGGTTTTT 253105
Query 147174 AAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTT--ATAGGTTGGATTGG 147231
||||| |||| |||| ||| || || |||||| |||||| | || | | |||
Sbjct 253106 AAACCTTTTTTCCAACCATAAAAATGCATCGATGAT--AACTTTGCAAAGTTGGCATTTT 253163
Query 147232 CCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATGT 147291
||| | || ||| | || || || | || || |||| ||||| ||||| |
Sbjct 253164 CCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGACCCCTATCTGCAGCCATAT 253223
Query 147292 CCAACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTGTG 147351
| | ||| ||||| |||||||||||| | ||||| | ||| | |||| | ||
Sbjct 253224 CAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAGCTCACGTATATCTTCTG 253283
Query 147352 GAATTTCATCAATATTTTGTACAGATCCGTTGTTTTTAATAATTTTT 147398
||||| | || ||||| | | ||| || ||| ||| || |||
Sbjct 253284 GAATTGTAGGTATGTTTTGAATACTTCCATTATTTGCAATTATATTT 253330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478657296262160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |