Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq223 226 7e-54
seq401 105 2e-17
seq290 87.8 5e-12
>seq223
Length=111419
Score = 226 bits (250), Expect = 7e-54
Identities = 542/800 (68%), Gaps = 35/800 (4%)
Strand=Plus/Minus
Query 22168 GATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCATTCTTT 22227
|||||| || |||| ||| ||| ||| |||||||||||| ||||||| || |||
Sbjct 59620 GATTGGGAAAGTCTTAAAGATCCTGAAAGACACTTTATCAAATATGTTCTAGCCTTTTTT 59561
Query 22228 GCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCATCTGAAATTCAA 22287
||| | || ||||| ||| | || || | | | |||||| ||||| |||
Sbjct 59560 GCTGCAAGTGATGGTATTGTTATGGAAAACTTGGCGGTAAATTTTCTTAGAGAAATACAA 59501
Query 22288 TACCCAGAGGCCAGA-TGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGA 22346
||||| || ||| ||| | |||| | | |||||| |||||| | | || ||
Sbjct 59500 ATACCAGAAGCTAGAATGTAT-TATGCTTTTCAAATGGCTATTGAACAAATACATAATGA 59442
Query 22347 AACATATTC--TA-----TGAT-GCTACAGTCACTCGTAGAAGATAAAGACGAACAACGA 22398
|||||||| || |||| | || | | ||| ||| |||||| ||| |
Sbjct 59441 GACATATTCATTACTCATTGATAGATATATT-ACT----GAAATTAAAGAACGTCAA--A 59389
Query 22399 AACTTATTCCGCGCGAT-TCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCT 22457
||| || || || || || |||| || |||| || |||||||| |||||
Sbjct 59388 TGCTTTTTGAA-GCAATCTCTCATATTTCAG-CAGTTAAAAAAAAGGCAGAGTGGGCAAC 59331
Query 22458 GAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTG--GTT 22515
||||||||||| ||| | || || || || | |||||| ||| ||||| |||
Sbjct 59330 TAAATGGATGAATTGTGATAGATCTTTTGCTGAGAGAATTATTGGATT--CTGTGCAGTT 59273
Query 22516 GAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAAT 22574
||||| || || |||||||| ||| |||||||| || |||||||| |||||||||| | |
Sbjct 59272 GAAGGAATCTTATTTTCTGGTAGC-TTTTGTGCTATTTTTTGGCTTAAAAAACGTGGACT 59214
Query 22575 TATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGA 22634
|||||| || || || |||||||| || | || ||||| ||||| || || ||| | ||
Sbjct 59213 TATGCCTGGACTCACCTTTTCAAACGAACTTATCAGCCGTGATGAAGGACTACATGCTGA 59154
Query 22635 TTTTGCGTG--TATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTA 22692
|||||| || || ||||| | | | || |||||| ||| | | |||
Sbjct 59153 TTTTGCTTGCTTAATCTATAAAGCCCTTAAAT-----TTAAACTACCAACTTCTAGAGTA 59099
Query 22693 CTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCA 22752
| | || || || | || ||||| ||||| | || |||| || | | ||
Sbjct 59098 CAACAAATCATCTCAGAAGCTGTTGATGTTGAAAGAAACTTCCTTTGTGATTCTCTTCCT 59039
Query 22753 GTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGAT 22812
|| ||| |||||||| ||| || | ||| | ||||||| ||||||| || |||
Sbjct 59038 GTTGATCTTATTGGTATGAATTCCAGACTTATGGCTCAATATATTGAATTTGTAGCTGAT 58979
Query 22813 CGTCTATTAATTTCACTCGGT-TATGCAAAGCATTATAACGTCGTTAATCCATTTGAATG 22871
| ||| | || | | | | | |||| | ||||| ||| ||||| ||||| ||
Sbjct 58978 AGACTACTTTTTGCTTTAGATGTCCCCAAAATA-TATAATGTCACCAATCCTTTTGATTG 58920
Query 22872 GATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATA 22931
|||||| ||||||||||| |||| || || |||||||||||||| |||||||| |||||
Sbjct 58919 GATGGACCTTATTTCACTCCAAGGTAAAACAAATTTCTTCGAAAAGAGAGTTGGAGAATA 58860
Query 22932 CCAAAAAGCAGGTGTTATGG 22951
||||| || || || ||||
Sbjct 58859 CCAAATGGCTGGAGTAATGG 58840
>seq401
Length=300945
Score = 105 bits (116), Expect = 2e-17
Identities = 175/253 (69%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 145537 CTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTCTGGAT 145596
||||||| ||||| || ||||| ||| |||||| | | | || || || |||| ||
Sbjct 117075 CTTCATCAGAAAAACCTGTTCCTGCCTTACATACAGTCTCATATACCTCCTCCTCTGTAT 117134
Query 145597 CATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGTATACC 145656
||| || || | | | | ||| | || ||| | | ||| || ||| |
Sbjct 117135 TATAAACAGCTAATAAAAAAGTCCCAAAAACCCCATTCCTTTTACCTTTTCCGTAGCATG 117194
Query 145657 CCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTTTAAGTT 145716
| ||||| || |||| |||| ||||||| | ||| | | |||||| ||||||| ||
Sbjct 117195 CTGCAATAGGAACAACATCAATACTATCAGTTAGTCCATCCACATAATCTTTTTTAATTT 117254
Query 145717 TTAGCCAATTGAGAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAATGATTTTA 145776
||| |||||| ||||| | ||| |||||||||||||| | || || | ||| | ||| |
Sbjct 117255 TTAACCAATTAAGAGATCTTTTTGATGGTTCATAGCTTGCATTTTCATGCAAGGTTTTGA 117314
Query 145777 CCATTAGCCCCTC 145789
|||| || |||||
Sbjct 117315 CCATGAGTCCCTC 117327
>seq290
Length=478353
Score = 87.8 bits (96), Expect = 5e-12
Identities = 280/429 (65%), Gaps = 18/429 (4%)
Strand=Plus/Minus
Query 364720 AAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAG 364779
||| |||| | ||| || || ||| | | | | || ||||| || || |||||| |||||
Sbjct 253533 AAGTATGGGATTCGTAATTCTCTCTTAATATCTCCAATGCCTACTGCCTCTACTTCACAG 253474
Query 364780 ATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTT 364839
|| | || ||||| ||| | || || || ||||| ||| ||||| || ||||
Sbjct 253473 ATTTTAGGTAACAATGAGAGTTTTGAGCCCTTTACTTCAAATATTTATCATCGTAGGGTG 253414
Query 364840 CTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGG 364899
|| || || ||||| ||||| || | || | || ||| | | || | ||
Sbjct 253413 CTATCTGGTGAATTCTTTGTAGTGAACCCACATTTACTAAATGATTTGTTAGAACTTGGA 253354
Query 364900 CTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT 364959
| |||| ||| || | ||| | |||| || || |||||| | | || |||||
Sbjct 253353 TTATGGGATGATAGGCTTAAGCAAAATATAATTGCAAATAATGGAAGTATTCAAAACATA 253294
Query 364960 CCAGGATTTCCAGAAGAT---CTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATG 365016
|| | ||||||||||| | ||| |||| || || || ||||||||| | |
Sbjct 253293 CCTACAATTCCAGAAGATATACGTGAGC---TTTATAAGACTGTTTGGGAAATT---AAG 253240
Query 365017 CGA---ACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCG 365073
| | || | ||||||||||| || ||| | ||| | | | | || || |||||
Sbjct 253239 CAAAAGACGGTGATTGATATGGCTGCAGATAGGGGTCCATATGTTTGCCAATCTCAGTCT 253180
Query 365074 TTTAACGTATTCAT---GACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTAC 365130
|| || ||||||| || ||||| || || ||| | |||| |||||||| ||
Sbjct 253179 TTGAA--TATTCATATGGAAAATGCCAA-CTTTGCAAAGTTATCATCGATGCATTTTTAT 253123
Query 365131 GGGTGGAAA 365139
|| ||||||
Sbjct 253122 GGTTGGAAA 253114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303339355567046
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |