Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq223 226 7e-54 seq401 105 2e-17 seq290 87.8 5e-12 >seq223 Length=111419 Score = 226 bits (250), Expect = 7e-54 Identities = 542/800 (68%), Gaps = 35/800 (4%) Strand=Plus/Minus Query 22168 GATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCATTCTTT 22227 |||||| || |||| ||| ||| ||| |||||||||||| ||||||| || ||| Sbjct 59620 GATTGGGAAAGTCTTAAAGATCCTGAAAGACACTTTATCAAATATGTTCTAGCCTTTTTT 59561 Query 22228 GCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCATCTGAAATTCAA 22287 ||| | || ||||| ||| | || || | | | |||||| ||||| ||| Sbjct 59560 GCTGCAAGTGATGGTATTGTTATGGAAAACTTGGCGGTAAATTTTCTTAGAGAAATACAA 59501 Query 22288 TACCCAGAGGCCAGA-TGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGA 22346 ||||| || ||| ||| | |||| | | |||||| |||||| | | || || Sbjct 59500 ATACCAGAAGCTAGAATGTAT-TATGCTTTTCAAATGGCTATTGAACAAATACATAATGA 59442 Query 22347 AACATATTC--TA-----TGAT-GCTACAGTCACTCGTAGAAGATAAAGACGAACAACGA 22398 |||||||| || |||| | || | | ||| ||| |||||| ||| | Sbjct 59441 GACATATTCATTACTCATTGATAGATATATT-ACT----GAAATTAAAGAACGTCAA--A 59389 Query 22399 AACTTATTCCGCGCGAT-TCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCT 22457 ||| || || || || || |||| || |||| || |||||||| ||||| Sbjct 59388 TGCTTTTTGAA-GCAATCTCTCATATTTCAG-CAGTTAAAAAAAAGGCAGAGTGGGCAAC 59331 Query 22458 GAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTG--GTT 22515 ||||||||||| ||| | || || || || | |||||| ||| ||||| ||| Sbjct 59330 TAAATGGATGAATTGTGATAGATCTTTTGCTGAGAGAATTATTGGATT--CTGTGCAGTT 59273 Query 22516 GAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAAT 22574 ||||| || || |||||||| ||| |||||||| || |||||||| |||||||||| | | Sbjct 59272 GAAGGAATCTTATTTTCTGGTAGC-TTTTGTGCTATTTTTTGGCTTAAAAAACGTGGACT 59214 Query 22575 TATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGA 22634 |||||| || || || |||||||| || | || ||||| ||||| || || ||| | || Sbjct 59213 TATGCCTGGACTCACCTTTTCAAACGAACTTATCAGCCGTGATGAAGGACTACATGCTGA 59154 Query 22635 TTTTGCGTG--TATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTA 22692 |||||| || || ||||| | | | || |||||| ||| | | ||| Sbjct 59153 TTTTGCTTGCTTAATCTATAAAGCCCTTAAAT-----TTAAACTACCAACTTCTAGAGTA 59099 Query 22693 CTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCA 22752 | | || || || | || ||||| ||||| | || |||| || | | || Sbjct 59098 CAACAAATCATCTCAGAAGCTGTTGATGTTGAAAGAAACTTCCTTTGTGATTCTCTTCCT 59039 Query 22753 GTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGAT 22812 || ||| |||||||| ||| || | ||| | ||||||| ||||||| || ||| Sbjct 59038 GTTGATCTTATTGGTATGAATTCCAGACTTATGGCTCAATATATTGAATTTGTAGCTGAT 58979 Query 22813 CGTCTATTAATTTCACTCGGT-TATGCAAAGCATTATAACGTCGTTAATCCATTTGAATG 22871 | ||| | || | | | | | |||| | ||||| ||| ||||| ||||| || Sbjct 58978 AGACTACTTTTTGCTTTAGATGTCCCCAAAATA-TATAATGTCACCAATCCTTTTGATTG 58920 Query 22872 GATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATA 22931 |||||| ||||||||||| |||| || || |||||||||||||| |||||||| ||||| Sbjct 58919 GATGGACCTTATTTCACTCCAAGGTAAAACAAATTTCTTCGAAAAGAGAGTTGGAGAATA 58860 Query 22932 CCAAAAAGCAGGTGTTATGG 22951 ||||| || || || |||| Sbjct 58859 CCAAATGGCTGGAGTAATGG 58840 >seq401 Length=300945 Score = 105 bits (116), Expect = 2e-17 Identities = 175/253 (69%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 145537 CTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTCTGGAT 145596 ||||||| ||||| || ||||| ||| |||||| | | | || || || |||| || Sbjct 117075 CTTCATCAGAAAAACCTGTTCCTGCCTTACATACAGTCTCATATACCTCCTCCTCTGTAT 117134 Query 145597 CATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGTATACC 145656 ||| || || | | | | ||| | || ||| | | ||| || ||| | Sbjct 117135 TATAAACAGCTAATAAAAAAGTCCCAAAAACCCCATTCCTTTTACCTTTTCCGTAGCATG 117194 Query 145657 CCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTTTAAGTT 145716 | ||||| || |||| |||| ||||||| | ||| | | |||||| ||||||| || Sbjct 117195 CTGCAATAGGAACAACATCAATACTATCAGTTAGTCCATCCACATAATCTTTTTTAATTT 117254 Query 145717 TTAGCCAATTGAGAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAATGATTTTA 145776 ||| |||||| ||||| | ||| |||||||||||||| | || || | ||| | ||| | Sbjct 117255 TTAACCAATTAAGAGATCTTTTTGATGGTTCATAGCTTGCATTTTCATGCAAGGTTTTGA 117314 Query 145777 CCATTAGCCCCTC 145789 |||| || ||||| Sbjct 117315 CCATGAGTCCCTC 117327 >seq290 Length=478353 Score = 87.8 bits (96), Expect = 5e-12 Identities = 280/429 (65%), Gaps = 18/429 (4%) Strand=Plus/Minus Query 364720 AAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAG 364779 ||| |||| | ||| || || ||| | | | | || ||||| || || |||||| ||||| Sbjct 253533 AAGTATGGGATTCGTAATTCTCTCTTAATATCTCCAATGCCTACTGCCTCTACTTCACAG 253474 Query 364780 ATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTT 364839 || | || ||||| ||| | || || || ||||| ||| ||||| || |||| Sbjct 253473 ATTTTAGGTAACAATGAGAGTTTTGAGCCCTTTACTTCAAATATTTATCATCGTAGGGTG 253414 Query 364840 CTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGG 364899 || || || ||||| ||||| || | || | || ||| | | || | || Sbjct 253413 CTATCTGGTGAATTCTTTGTAGTGAACCCACATTTACTAAATGATTTGTTAGAACTTGGA 253354 Query 364900 CTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT 364959 | |||| ||| || | ||| | |||| || || |||||| | | || ||||| Sbjct 253353 TTATGGGATGATAGGCTTAAGCAAAATATAATTGCAAATAATGGAAGTATTCAAAACATA 253294 Query 364960 CCAGGATTTCCAGAAGAT---CTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATG 365016 || | ||||||||||| | ||| |||| || || || ||||||||| | | Sbjct 253293 CCTACAATTCCAGAAGATATACGTGAGC---TTTATAAGACTGTTTGGGAAATT---AAG 253240 Query 365017 CGA---ACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCG 365073 | | || | ||||||||||| || ||| | ||| | | | | || || ||||| Sbjct 253239 CAAAAGACGGTGATTGATATGGCTGCAGATAGGGGTCCATATGTTTGCCAATCTCAGTCT 253180 Query 365074 TTTAACGTATTCAT---GACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTAC 365130 || || ||||||| || ||||| || || ||| | |||| |||||||| || Sbjct 253179 TTGAA--TATTCATATGGAAAATGCCAA-CTTTGCAAAGTTATCATCGATGCATTTTTAT 253123 Query 365131 GGGTGGAAA 365139 || |||||| Sbjct 253122 GGTTGGAAA 253114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303339355567046