Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq849 96.9 3e-15 >seq849 Length=33325 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 ||||| |||| || || |||||||| || |||||||| | || | |||||| Sbjct 19415 ACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGATAGAGTTCTTCCATCCTCT 19474 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 || ||||| |||||| |||| ||||| || ||||| || || |||||||| ||||| || Sbjct 19475 AGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCT-TG 19533 Query 131146 ATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 | | | ||||| | | | ||| | ||||| | | ||| | || | || | || || Sbjct 19534 AATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAGTCTT 19593 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || | |||||| || ||||||||||| Sbjct 19594 TCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 || ||||||| || || || ||||| || |||||||| | || | ||||||| Sbjct 19187 ACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCGTCCTCT 19246 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 | || || ||||| |||| ||||| || ||||| || || |||||||| ||||| || Sbjct 19247 AATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCT-TG 19305 Query 131146 ATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 | | | ||||| | | | ||| | ||||| | | ||| | || | || | || || Sbjct 19306 AATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTACTTCCAATGTTATAGTCTT 19365 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || | |||||| || ||||||||||| Sbjct 19366 TCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472007767163520