Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq290 277 2e-69 seq223 235 7e-57 >seq290 Length=478353 Score = 277 bits (306), Expect = 2e-69 Identities = 1147/1800 (64%), Gaps = 36/1800 (2%) Strand=Plus/Plus Query 61888 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 61947 ||| || || || ||||||| ||| |||| || ||||||||||| | || || Sbjct 253087 ATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTT 253146 Query 61948 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62007 | | | | | || | | ||||| ||||||| ||| ||| ||| | | | || Sbjct 253147 TGCAAAGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGACC 253206 Query 62008 CCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 62066 ||| ||||||||||| | || | ||||||||| ||||||||||| ||| ||||||| Sbjct 253207 CCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 253266 Query 62067 CTCGCTTAATATCTTCTGGAA-GGTTTGTA--TTCTGAATGGATCCACCATCTGCCATAA 62123 ||| | | ||||||||||||| || ||| || ||||| |||| || ||| || | Sbjct 253267 CTCACGT-ATATCTTCTGGAATTGTAGGTATGTTTTGAATACTTCCATTATTTGCAATTA 253325 Query 62124 TCCTATTCTTGATCTCATCATTCCATAAT----TTTCTCTCGGTTAAAACTCTAAGGAGA 62179 | | | ||| | | ||||| ||||||| |||| | ||| | | || | | Sbjct 253326 TATTTTGCTTAAGCCTATCATCCCATAATCCAAGTTCTAAC----AAATCATTTAGTAAA 253381 Query 62180 TGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 62239 || || || ||||| ||||| ||||| | || || ||| |||||||| ||| Sbjct 253382 TGTGGGTTCACTACAAAGAATTCACCAGATAGCACCCTACGATGATAAATATTTGAAGTA 253441 Query 62240 TACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 62299 | || || | | |||||| || || ||||| || | ||| || ||||| ||||| || Sbjct 253442 AAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCATTGGA 253501 Query 62300 GCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAA 62359 | | || | | ||| | || || || | |||| | ||||| || | ||||| Sbjct 253502 GATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAATCCCAG 253561 Query 62360 TTCCAAAGATCCGA---CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTG 62416 | ||||| | || ||| ||| ||| | ||||| ||||| Sbjct 253562 TCACAAAGCCCAGAATCTGGTGTAACTCCCCACATATCAAATTGCAAGATACCTTTACTC 253621 Query 62417 GCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCC 62476 || ||||| ||||| |||||||| || || || || || || ||||| || ||| Sbjct 253622 GCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGCTAGCC 253681 Query 62477 TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGG 62536 || | || ||||||| || ||| || || | ||||| || | || |||| Sbjct 253682 TCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTTTATCT 253741 Query 62537 CTATCAAATGG-ATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATAC 62594 ||| | || ||| ||| | ||||| ||| || | ||||| || || || | Sbjct 253742 GAGTCATACGGCATA--CGAAGCATCATAAAGCAGTCCGCGAGCCCTTGGACGCCGATTC 253799 Query 62595 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 62654 | | || | |||||| ||| || ||| | |||||| | | ||| || || | Sbjct 253800 CCAACGGACGATGTCTTAGATTTGAATTTTTACATTCTGGGAGGGAATAGTACCCAAAGT 253859 Query 62655 CTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT 62714 | | | |||||| | ||| || ||| || || || ||||| | ||| ||||| Sbjct 253860 CAACTACTTTATTTAAATTCCTCGTAATCACCTTCGTAACTTCCTTTAACTTGTCAAAAT 253919 Query 62715 CAAA---TCGCCCATCTATTACAAACATGTTC---AATGCAACAGATGCCAGATTACAAA 62768 ||| | |||| | ||| | ||| || | | ||||||||||||||||| Sbjct 253920 TAAATGTTTTGTTATCTTTATCAACGAACTTCGGTAACCCGATAGATGCCAGATTACAAA 253979 Query 62769 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 62828 | || | |||| || | |||| ||||| || ||||| | ||||| | | Sbjct 253980 CTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTACTTGAGACAA 254039 Query 62829 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 62888 | ||||| ||||| | ||| ||||| || | || |||||||||||| ||| |||| Sbjct 254040 TAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCAGCATCCTTATAACAAATAAATG 254099 Query 62889 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 62948 | || || |||||||| |||| | | || ||| | | | || || || Sbjct 254100 GCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAACCAAAGTTTTTGCGCTTTCATGG 254159 Query 62949 TAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTC--GAACTCGTCTCC 63006 | | | | | || | |||||||| | |||||| ||| ||||| || || Sbjct 254160 TCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGTACAAT--TTCCTAAACTCATCACC 254217 Query 63007 CCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 63066 |||||||| | || ||| || || ||||| |||||||| | ||| ||| | ||| Sbjct 254218 CCAAACATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTCCAATCT---TGATC 254274 Query 63067 CTT---CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 63123 ||| || | | |||||| |||||||||| |||||| || ||| || || | Sbjct 254275 CTTTTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGACA 254334 Query 63124 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63183 ||| || || ||||| || ||| ||| || | ||| | | || || |||| Sbjct 254335 TCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAAATG 254394 Query 63184 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63243 ||| |||||||| || || || ||| | || ||||| || || ||||| || || Sbjct 254395 CCATGGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATATA 254454 Query 63244 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT 63303 ||||| || | ||||||||| | || ||||||||| | ||||| || | |||||||| Sbjct 254455 CCTAGCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTGGT 254514 Query 63304 CCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGC 63363 ||| ||||| ||| | | | ||||||||| | || | || | || ||||| Sbjct 254515 TCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCTGC 254574 Query 63364 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 63423 | || || ||| ||| ||| ||| ||| | || || | ||| || || Sbjct 254575 AGTCTTGCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCTTC 254634 Query 63424 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 63483 || | || | ||| || |||||||| | || ||||| | ||| || | Sbjct 254635 TGGAATTCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAAAG 254694 Query 63484 GGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63543 ||||| | ||| || ||||| |||||| || | || | ||| ||||||| ||| | Sbjct 254695 TGTAGGTGTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTCAAGAGCAGC 254754 Query 63544 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 || ||||| | ||| || || | || ||||||| | ||||| |||||||| Sbjct 254755 TTCAATATCACCACAATGTATACCACAAGAAACTCGCATTAGAAGATGCTGTGGTCTTTC 254814 Query 63604 AACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63663 || | ||||| | ||| | | | |||||| |||| | ||| || || ||||||| Sbjct 254815 CACAACTTTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGTCTTGAAGGCAAAATA 254874 >seq223 Length=111419 Score = 235 bits (260), Expect = 7e-57 Identities = 579/867 (67%), Gaps = 21/867 (2%) Strand=Plus/Plus Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 |||||||||| || || | |||||||| ||||| |||||||||| | ||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 32431 CCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 32490 |||| |||| || |||||||| |||||||| ||||| | | || || ||| | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974 Query 32491 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 32550 |||||| || |||||||| |||||| ||| | | ||||||| || ||||| | Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034 Query 32551 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 32610 ||| ||||||| || ||| || | | ||||| | || || |||| || || Sbjct 59035 CAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATTT 59094 Query 32611 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATG---TTTAAACATCAAACATGCGA 32667 | |||| | | | ||| | | ||| | | |||| | || || || || | Sbjct 59095 GTTGTACTCTAGA---AGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGCAA 59151 Query 32668 AATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 |||| ||| ||||| || || || | || || | |||||| ||||| |||||||| ||| Sbjct 59152 AATCAGCA-TGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGGC 59210 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCC 32785 || || ||||| |||||||||||||| || | | |||| | | |||||||| || ||||| Sbjct 59211 ATAAGTCCACGTTTTTTAAGCCAAAAAATAG-CACAAAAGCTACCAGAAAATAAGATTCC 59269 Query 32786 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC---ATGTATCCA 32842 ||| ||||| || |||||| |||||| || || | || || || ||||| Sbjct 59270 TTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTATCACAATTCATCCA 59326 Query 32843 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 || ||||| || ||||| ||||| || | || || || | ||| || Sbjct 59327 TTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAAG 59386 Query 32903 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCC 32960 | ||| ||| | || ||| |||| ||||||| | || || ||| | || Sbjct 59387 CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGA--ATATGTCTCA 59444 Query 32961 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGT 33020 ||| || | |||||| ||||||||||| | || | |||||| || | || ||| Sbjct 59445 TTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTGGTATTTGT 59504 Query 33021 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33080 | |||| || ||| | | || || ||||| | || || || ||||| || |||||| Sbjct 59505 ATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAA 59564 Query 33081 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33140 || || | |||| ||| ||||| | | |||| | | || | | |||||| || Sbjct 59565 AAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAATCTCTG 59624 Query 33141 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33200 ||||| | || ||| | |||||| |||||||||||| || || ||||||||| Sbjct 59625 GAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATAC 59684 Query 33201 ATATTCCAGATGTCATGATATTGAATT 33227 || ||| || || | | ||| |||| Sbjct 59685 ATTGACCAAATATCTTCA-ATTAAATT 59710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633625243898800