Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq445 149 5e-31 seq849 145 7e-30 >seq445 Length=134117 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| ||||| || || || |||||||| | ||||| ||| | || Sbjct 79220 ATGCAAATTTTTGTAAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCC 79279 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| ||| ||| |||||||| || ||||||||||| ||| Sbjct 79280 GACACCATTGAGAATGTTAAGGCAAAGATCCAGGACAAAGAGGGCATTCCACCTGATCAA 79339 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || ||||| ||||||| | ||| | || |||||| Sbjct 79340 CAGCGTCTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTTTATCTGACTACAAT 79399 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || || || || ||||||| ||||| || || ||||| || Sbjct 79400 ATTCAGAAGGAGTCTACCTTACATTTGGTGCTGAGACTTAGAGGTGG 79446 >seq849 Length=33325 Score = 145 bits (160), Expect = 7e-30 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || |||||||| || || | || ||| | ||||| ||| | || Sbjct 19395 ATGCAGATTTTTGTTAAAACTTTGACGGGAAAGACTATAACATTGGAAGTAGAGCCTTCA 19336 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || |||||| | || ||||||| | ||| ||||| ||||| |||||||| ||| Sbjct 19335 GATACAATCGAG--AATGTTAAAGCAAAGATTCAA-GACAAGGAAGGAATTCCACCCGAC 19279 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | || ||||| || ||||||||||| || | | ||| | |||||| Sbjct 19278 CAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGACGGAAGAACTCTCTCTGATTAC 19219 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| |||||||||||||| ||||||| || | || || ||||| |||| Sbjct 19218 AATATCCAAAAAGAATCCACTTTACATTTGGTATTGAGACTTAGAGGTGGAA 19167 Score = 136 bits (150), Expect = 3e-27 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | |||||| | ||||| ||| | || Sbjct 19851 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACATTGGAAGTAGAGCCTTCA 19792 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || ||||||| | ||| || || ||||| ||||||||||| Sbjct 19791 GATACAATTGAG--AATGTTAAAGCAAAGATTCAA-GATAAGGAAGGAATTCCACCTGAT 19735 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | || ||||| || ||||||||||| || | | ||| | |||||| Sbjct 19734 CAACAACGTTTGATCTTTGCGGGGAAACAATTAGAGGACGGAAGAACTCTCTCTGATTAC 19675 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| |||||||| ||||||| || | || || ||||| || Sbjct 19674 AATATCCAAAAGGAATCCACTTTACATTTGGTATTGAGACTCAGAGGTGG 19625 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || |||||||| || || | |||||| | ||||| ||| | || Sbjct 19623 ATGCAGATTTTTGTTAAAACTTTGACAGGAAAGACTATCACATTGGAAGTAGAGCCTTCA 19564 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || ||||||| | ||| ||||| ||||| |||||||| ||| Sbjct 19563 GATACAATTGAG--AATGTTAAAGCAAAGATTCAA-GACAAGGAAGGAATTCCACCCGAC 19507 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | || || || || || ||| |||| |||| | ||| | |||||| Sbjct 19506 CAACAACGTTTGATCTTCGCAGGAAAGCAACTAGAGGATGGAAGAACTCTATCTGATTAC 19447 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| |||||||| |||| ||||| | ||||| ||||| || Sbjct 19446 AATATCCAAAAGGAATCCACTTTACACTTAGTCTTGAGGCTCAGAGGTGG 19397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323495149195