Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq223 163 3e-35
>seq223
Length=111419
Score = 163 bits (180), Expect = 3e-35
Identities = 578/875 (66%), Gaps = 36/875 (4%)
Strand=Plus/Plus
Query 92804 TTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAAT 92863
|||||||||| |||||| | ||||| ||||||||||| || |||| | || || |
Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914
Query 92864 TCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATC-AACTCGTACAAT 92920
|| | | | ||||| || | ||||| || ||| ||| || | | | |
Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATA-TATTTTGGGGACATCTAAAGCAAAAAGT 58973
Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATC-ACAATTCATTCCTAGAAG 92979
| |||||||||||||||||| || || |||| ||| || || ||||||| || | |||
Sbjct 58974 AGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTGGAATTCATACCAATAAG 59032
Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039
| ||||| |||| || | ||| | | | || | |||| |||||| | |||
Sbjct 59033 ATCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGAT 59092
Query 93040 TTCTATTACTCTACTATTTGGTGGTTT--TTGTACGACATAATTGTACATTAAGCACGCA 93097
|| | ||||||| | ||||| |||| | || | | || || |||||||| |||
Sbjct 59093 TTGTTGTACTCTAGAAGTTGGTAGTTTAAATTTAAGGGCT--TTATAGATTAAGCAAGCA 59150
Query 93098 AAGTCGGTATGTAAACCTTCGTCTCG--TGATATCAACTCATTGCTGAATGTTAAACCTG 93155
|| || | ||||| ||||| || || ||||| | || || || || | || |
Sbjct 59151 AAATCAGCATGTAGTCCTTCATCACGGCTGATA--AGTTCGTTTGAAAAGGTGAGTCCAG 59208
Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215
| | ||||| ||||| || |||||||| || | | ||| ||||||||||| || || |
Sbjct 59209 GCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGATTC 59268
Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275
|||| || || ||| | | ||| | || |||||| | || || | ||||
Sbjct 59269 CTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTATCACAATTCATCC 59325
Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAA-TAC-AAGGTAGTGTTTCGATAGCGTTAAA 93333
|||| ||||| || || ||||| |||| | | | || || ||| || | |||
Sbjct 59326 ATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATA-TG-AGAGATTGCTTCAAA 59383
Query 93334 TAGGTAATCTCGCTCGTCCGAATCTC-GT-ATGTATGTATCGATTAACAGAGAATACATT 93391
|| | || || | ||| || || || ||| |||| || | | ||||| |
Sbjct 59384 AAGCATTTGACGTTCTT--TAATTTCAGTAATATATCTATCAATGAGTAATGAATATGTC 59441
Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA-TCTAGCTTCCGTGAT 93450
||| ||| | | || || || ||||| || | || | ||| ||||||||| | ||
Sbjct 59442 TCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATA-ATACATTCTAGCTTCTGGTAT 59500
Query 93451 CTGCACTTCT-TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509
|| | |||| | ||||||| | | | || ||||| | || |||||||| ||| |
Sbjct 59501 TTGTATTTCTCTAAGAAAATTTACCGCCAAG-TTTTCCATAACAATACCATCACTTGCAG 59559
Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT 93569
||||||| || | | || || ||||| ||| | ||| ||||||||| | |||||||
Sbjct 59560 CAAAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAAT 59619
Query 93570 C---GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626
| ||| ||||| | ||| | |||||| | |||||| |||||||| ||||
Sbjct 59620 CTCTGGA---ATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTT 59676
Query 93627 TTTTGTACATATCCCATATGTCTTGATATTGAATT 93661
|||| ||||| ||| || |||| | ||| ||||
Sbjct 59677 TTTTATACATTGACCAAATATCTTCA-ATTAAATT 59710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556854862471720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |