Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq223 163 3e-35 >seq223 Length=111419 Score = 163 bits (180), Expect = 3e-35 Identities = 578/875 (66%), Gaps = 36/875 (4%) Strand=Plus/Plus Query 92804 TTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAAT 92863 |||||||||| |||||| | ||||| ||||||||||| || |||| | || || | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 92864 TCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATC-AACTCGTACAAT 92920 || | | | ||||| || | ||||| || ||| ||| || | | | | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATA-TATTTTGGGGACATCTAAAGCAAAAAGT 58973 Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATC-ACAATTCATTCCTAGAAG 92979 | |||||||||||||||||| || || |||| ||| || || ||||||| || | ||| Sbjct 58974 AGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTGGAATTCATACCAATAAG 59032 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 | ||||| |||| || | ||| | | | || | |||| |||||| | ||| Sbjct 59033 ATCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGAT 59092 Query 93040 TTCTATTACTCTACTATTTGGTGGTTT--TTGTACGACATAATTGTACATTAAGCACGCA 93097 || | ||||||| | ||||| |||| | || | | || || |||||||| ||| Sbjct 59093 TTGTTGTACTCTAGAAGTTGGTAGTTTAAATTTAAGGGCT--TTATAGATTAAGCAAGCA 59150 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCG--TGATATCAACTCATTGCTGAATGTTAAACCTG 93155 || || | ||||| ||||| || || ||||| | || || || || | || | Sbjct 59151 AAATCAGCATGTAGTCCTTCATCACGGCTGATA--AGTTCGTTTGAAAAGGTGAGTCCAG 59208 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | ||||| ||||| || |||||||| || | | ||| ||||||||||| || || | Sbjct 59209 GCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGATTC 59268 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 |||| || || ||| | | ||| | || |||||| | || || | |||| Sbjct 59269 CTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTATCACAATTCATCC 59325 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAA-TAC-AAGGTAGTGTTTCGATAGCGTTAAA 93333 |||| ||||| || || ||||| |||| | | | || || ||| || | ||| Sbjct 59326 ATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATA-TG-AGAGATTGCTTCAAA 59383 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTC-GT-ATGTATGTATCGATTAACAGAGAATACATT 93391 || | || || | ||| || || || ||| |||| || | | ||||| | Sbjct 59384 AAGCATTTGACGTTCTT--TAATTTCAGTAATATATCTATCAATGAGTAATGAATATGTC 59441 Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA-TCTAGCTTCCGTGAT 93450 ||| ||| | | || || || ||||| || | || | ||| ||||||||| | || Sbjct 59442 TCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATA-ATACATTCTAGCTTCTGGTAT 59500 Query 93451 CTGCACTTCT-TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 || | |||| | ||||||| | | | || ||||| | || |||||||| ||| | Sbjct 59501 TTGTATTTCTCTAAGAAAATTTACCGCCAAG-TTTTCCATAACAATACCATCACTTGCAG 59559 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT 93569 ||||||| || | | || || ||||| ||| | ||| ||||||||| | ||||||| Sbjct 59560 CAAAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAAT 59619 Query 93570 C---GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 | ||| ||||| | ||| | |||||| | |||||| |||||||| |||| Sbjct 59620 CTCTGGA---ATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTT 59676 Query 93627 TTTTGTACATATCCCATATGTCTTGATATTGAATT 93661 |||| ||||| ||| || |||| | ||| |||| Sbjct 59677 TTTTATACATTGACCAAATATCTTCA-ATTAAATT 59710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854862471720