Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_008520.2
Length=132239
Score E
Sequences producing significant alignments: (Bits) Value
seq849 86.0 5e-12
seq445 86.0 5e-12
>seq849
Length=33325
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
||||| |||||||| ||||| |||| || || || || || ||||| || ||
Sbjct 19395 ATGCAGATTTTTGTTAAAACTTTGACGGGAAAGACTATAACATTGGAAGTAGAGCCTTCA 19336
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306
||| | | | | || ||| ||| ||| ||||| ||||| |||| ||| |||
Sbjct 19335 GATACAATCGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAA 19276
Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366
||| | | || | ||| || |||||||| || || | |||| | | ||||| |||
Sbjct 19275 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAAT 19216
Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
|| ||||||||||| || ||||||| || ||| | || | |||||
Sbjct 19215 ATCCAAAAAGAATCCACTTTACATTTGGTATTGAGACTTAGAGGTGG 19169
>seq445
Length=134117
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243
|| |||||||||||||| ||||| | || || || ||||| || ||||| || ||
Sbjct 79217 AAGATGCAAATTTTTGTAAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCT 79276
Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303
||| | ||| | || || ||| || |||||||| ||| |||| |||
Sbjct 79277 TCCGACACCATTGAGAATGTTAAGGCAAAGATCCAGGACAAAGAGGGCATTCCACCTGAT 79336
Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363
||||| | || || | ||| || || |||||||||||| | |||| | | || ||
Sbjct 79337 CAACAGCGTCTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTTTATCTGACTAC 79396
Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
||||| || || || ||||| ||||||| ||| || | || | |||||
Sbjct 79397 AATATTCAGAAGGAGTCTACCTTACATTTGGTGCTGAGACTTAGAGGTGG 79446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 423035602102600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |