Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq849 192 1e-43
seq445 134 3e-26
>seq849
Length=33325
Score = 192 bits (212), Expect = 1e-43
Identities = 186/239 (78%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 68223 TGATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATG 68282
|| ||||| |||| || | ||| | ||||||||| |||| ||||| |||||||||||
Sbjct 19157 TGTTTTTACATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATA 19216
Query 68283 TTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGT 68342
|| ||||| ||||| || || || || ||||| || || || || || || | | ||||
Sbjct 19217 TTGTAATCAGAGAGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGT 19276
Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402
|||||||||||||| ||||||||||||||||||||||| || || |||||| || |||
Sbjct 19277 TGGTCGGGTGGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCT 19336
Query 68403 GCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| | ||||||||||| || || || |||||||| | || || || || ||||||||
Sbjct 19337 GAAGGCTCTACTTCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395
Score = 172 bits (190), Expect = 1e-37
Identities = 166/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||| || ||||||| ||||| || |||||||| || ||||| || || || || |||||
Sbjct 19411 CAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGATAGAGTTCTTCCATC 19470
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
|||| ||||| || ||||| || | | |||||||||||||||||| |||||||||||
Sbjct 19471 CTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTC 19530
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
|||||||||||| || || ||| || || |||| | ||||||||||| ||||| ||
Sbjct 19531 TTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAGT 19590
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || | || || || || ||||||||
Sbjct 19591 CTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623
Score = 168 bits (186), Expect = 1e-36
Identities = 165/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||||||||| |||| ||||| || |||||||| || ||||| ||||| || || || ||
Sbjct 19639 CAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAGAGAGTTCTTCCGTC 19698
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
||||| || ||||| || || || | | |||||| || |||||||| |||||||| ||
Sbjct 19699 CTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATC 19758
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
|||||||||||| || || ||| || || |||| | ||||||||||| ||||| ||
Sbjct 19759 TTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAGT 19818
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || | ||||| || || ||||||||
Sbjct 19819 CTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 19851
>seq445
Length=134117
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || | ||| | || ||||| |||| || ||||| || || || || || || ||
Sbjct 79446 CCACCTCTAAGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGAT 79387
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || || |||||||| || ||||| || || || || || | ||||| || ||||||
Sbjct 79386 AAAGTTCTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGA 79327
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| || ||||| || ||||||||||| || ||| |||||||| | | || |||
Sbjct 79326 ATGCCCTCTTTGTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACT 79267
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| |||||||| ||||| || | || || || || || |||||
Sbjct 79266 TCCAATGTGATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCAT 79220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921612573201160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |