Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq445 87.8 1e-12 >seq445 Length=134117 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 || |||||||| ||| | ||||| ||||| || || ||||| || ||||| || | Sbjct 79217 AAGATGCAAATTTTTGTAAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCT 79276 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTA 21947 | || || | | || ||||| ||| || || |||||||| | ||||| Sbjct 79277 TCCGACACCATTGAGAATGTTAAGGCAAAGATCCAGGACAAAGAGGGCATTCCACCTG-- 79334 Query 21948 AACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGAT 22007 | |||||| | || |||||||| || || ||| | |||||| | |||| | | || Sbjct 79335 -ATCAACAGCGTCTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTTTATCTGAC 79393 Query 22008 TACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||||||||| ||||| | ||| |||| Sbjct 79394 TACAATATTCAGAAGGAGTCTACCTTACATTTGGT 79428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358121076956962