Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq445 95.1 1e-14 >seq445 Length=134117 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||| || | |||||||| ||| | || |||||||||||| ||||| || | Sbjct 79447 ACCACCTCTAAGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGA 79388 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || ||||||||||| || ||||| ||||| ||||| ||||| || Sbjct 79387 TAAAGTTCTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGG 79328 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTC 34076 | || |||||||||| || ||| ||||| | || || | || | || || Sbjct 79327 AATGCCCTCTTTGTCCTGGATCTTTGCCTTAA---CATTCTCAATGGTGTCGGAAGGCTC 79271 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 ||| | || || || ||||| |||| ||||| ||||| |||||||| || Sbjct 79270 AACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATCTT 79217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397058272164106