Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq849 154 3e-32
seq445 107 5e-18
>seq849
Length=33325
Score = 154 bits (170), Expect = 3e-32
Identities = 177/238 (74%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | |||||| | ||| | ||| | ||| ||| ||||||||||| || || | |
Sbjct 19625 CCACCTCTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAG 19684
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || | |||||| ||||||||||| || || ||||||| ||| |||||| | |||
Sbjct 19685 AGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGTGGA 19744
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||| || || || ||||| || || || || | ||| | ||||||
Sbjct 19745 ATTCCTTCCTTATCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACT 19804
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTCT 288484
|| | ||||| ||||| || |||| |||||| || || |||||||| | ||||||
Sbjct 19805 TCCAATGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTGTATTCT 19862
Score = 143 bits (158), Expect = 6e-29
Identities = 173/234 (74%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299
||||| |||||| | ||||| | ||| | ||| | ||| ||||||||||||||| ||
Sbjct 19163 TACAT-TCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTA 19221
Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359
|| | ||| || | |||||| ||||||||||||||||| ||||||| ||| |||||
Sbjct 19222 ATCAGAGAGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTC 19281
Query 288360 ATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419
||| |||||||| || || || || || ||||| || || || || | ||| |
Sbjct 19282 GGGTGGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGG 19341
Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||||||| | || || ||||| || |||| ||| || || || ||||||||
Sbjct 19342 CTCTACTTCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395
Score = 116 bits (128), Expect = 9e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| ||||||||||| || || | || || | ||| || |||| ||| |||||||||||
Sbjct 19432 TTCCTTTTGGATATTGTAATCAGATAGAGTTCTTCCATCCTCTAGTTGCTTTCCTGCGAA 19491
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||||| ||| ||||| ||| |||||||| || || || || || ||||| || ||
Sbjct 19492 GATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATT 19551
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | ||| | |||||||| | ||||| ||||| || |||| ||| || ||
Sbjct 19552 CTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAGTCTTTCCTGTCAAAGTTTTAAC 19611
Query 288462 GAATATCTGCAT 288473
|| ||||||||
Sbjct 19612 AAAAATCTGCAT 19623
>seq445
Length=134117
Score = 107 bits (118), Expect = 5e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||||| || || | ||| | || || || || ||||| ||||| |
Sbjct 79446 CCACCTCTAAGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGAT 79387
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || | || ||||| ||||| |||||||| |||||||||||||||||| | |||
Sbjct 79386 AAAGTTCTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGA 79327
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || ||||| |||||||| || || || || || || || | ||| | || |||
Sbjct 79326 ATGCCCTCTTTGTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACT 79267
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | ||||| ||||| || || | ||| || || || || |||||
Sbjct 79266 TCCAATGTGATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCAT 79220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179641507483334
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |