Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq849 111 2e-19 seq445 93.3 4e-14 >seq849 Length=33325 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| || |||||||| | || || | |||| || | || || || Sbjct 19199 GTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCGTCCTCTAATTGTTTTCCT 19258 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || |||||||| ||||||||||| || ||||| | | |||||||| Sbjct 19259 GCAAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTG-AATCTTTGCTTT 19317 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | |||||| | || ||||| | |||| ||||| || |||||||| Sbjct 19318 AACATTCTCGATTGTATCTGAAGGCTCTACTTCCAATGTTATAGTCTTTCCCGTCAAAGT 19377 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| || ||||| ||||| Sbjct 19378 TTTAACAAAAATCTGCAT 19395 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| || |||||||| | | || | | || || || ||||| || Sbjct 19427 GTGGATTCCTTTTGGATATTGTAATCAGATAGAGTTCTTCCATCCTCTAGTTGCTTTCCT 19486 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | || || |||||||| ||||||||||| || ||||| | | |||||||| Sbjct 19487 GCGAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTG-AATCTTTGCTTT 19545 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | |||||| | || ||||| | || | ||||| || |||||||| Sbjct 19546 AACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAGTCTTTCCTGTCAAAGT 19605 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| || ||||| ||||| Sbjct 19606 TTTAACAAAAATCTGCAT 19623 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| || |||||||| | || || | |||| || | || || || Sbjct 19655 GTGGATTCCTTTTGGATATTGTAATCAGAGAGAGTTCTTCCGTCCTCTAATTGTTTCCCC 19714 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || || || || ||||||||||| || ||||| | | |||||||| Sbjct 19715 GCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATCTTG-AATCTTTGCTTT 19773 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | |||||| | || ||||| | || | ||||| || |||||||| Sbjct 19774 AACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAGTCTTTCCTGTCAAAGT 19833 Query 64426 TTTTACGAAAATTTGCATTTT 64446 || || ||||| ||||| || Sbjct 19834 CTTAACAAAAATCTGCATATT 19854 >seq445 Length=134117 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| ||||| | ||| | || || || || ||||| ||||| || | | || | | Sbjct 79435 TCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGATAAAGTTCTGCC 79376 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | ||||| || ||| | || || ||||| || || || ||||| || ||||| Sbjct 79375 ATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGAATGCCCTCTTT 79316 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || ||| ||| ||| ||| | || || | || ||||| | || | Sbjct 79315 GTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACTTCCAATGTGAT 79256 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || || ||||||||||| ||||||||||| || Sbjct 79255 GGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATCTT 79217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499639472537320