Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq849 111 2e-19
seq445 93.3 4e-14
>seq849
Length=33325
Score = 111 bits (122), Expect = 2e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| ||||||||||| || |||||||| | || || | |||| || | || || ||
Sbjct 19199 GTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCGTCCTCTAATTGTTTTCCT 19258
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || | || || |||||||| ||||||||||| || ||||| | | ||||||||
Sbjct 19259 GCAAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTG-AATCTTTGCTTT 19317
Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425
||| ||| | |||||| | || ||||| | |||| ||||| || ||||||||
Sbjct 19318 AACATTCTCGATTGTATCTGAAGGCTCTACTTCCAATGTTATAGTCTTTCCCGTCAAAGT 19377
Query 64426 TTTTACGAAAATTTGCAT 64443
||| || ||||| |||||
Sbjct 19378 TTTAACAAAAATCTGCAT 19395
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| ||||| ||||| || |||||||| | | || | | || || || ||||| ||
Sbjct 19427 GTGGATTCCTTTTGGATATTGTAATCAGATAGAGTTCTTCCATCCTCTAGTTGCTTTCCT 19486
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || | || || |||||||| ||||||||||| || ||||| | | ||||||||
Sbjct 19487 GCGAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTG-AATCTTTGCTTT 19545
Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425
||| ||| | |||||| | || ||||| | || | ||||| || ||||||||
Sbjct 19546 AACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAGTCTTTCCTGTCAAAGT 19605
Query 64426 TTTTACGAAAATTTGCAT 64443
||| || ||||| |||||
Sbjct 19606 TTTAACAAAAATCTGCAT 19623
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| ||||| ||||| || |||||||| | || || | |||| || | || || ||
Sbjct 19655 GTGGATTCCTTTTGGATATTGTAATCAGAGAGAGTTCTTCCGTCCTCTAATTGTTTCCCC 19714
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || | || || || || || ||||||||||| || ||||| | | ||||||||
Sbjct 19715 GCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATCTTG-AATCTTTGCTTT 19773
Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425
||| ||| | |||||| | || ||||| | || | ||||| || ||||||||
Sbjct 19774 AACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAGTCTTTCCTGTCAAAGT 19833
Query 64426 TTTTACGAAAATTTGCATTTT 64446
|| || ||||| ||||| ||
Sbjct 19834 CTTAACAAAAATCTGCATATT 19854
>seq445
Length=134117
Score = 93.3 bits (102), Expect = 4e-14
Identities = 152/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287
||| ||||| | ||| | || || || || ||||| ||||| || | | || | |
Sbjct 79435 TCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGATAAAGTTCTGCC 79376
Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347
||||| | ||||| || ||| | || || ||||| || || || ||||| || |||||
Sbjct 79375 ATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGAATGCCCTCTTT 79316
Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407
|| || || ||| ||| ||| ||| | || || | || ||||| | || |
Sbjct 79315 GTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACTTCCAATGTGAT 79256
Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|||||| || || ||||||||||| ||||||||||| ||
Sbjct 79255 GGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATCTT 79217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499639472537320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |