Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq445 96.9 3e-15
seq849 86.0 6e-12
>seq445
Length=134117
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTC 138464
|| ||||||| | | |||||||| ||||| |||||||| | ||| | || | || ||
Sbjct 79428 ACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGATAAAGTTCTGCCA-TCTTC 79370
Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524
| ||| || || | | |||| ||||||||||| || || || || || ||||||||
Sbjct 79369 CAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGAATGCCCTCTTTGTCCTG 79310
Query 138525 GATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584
||| ||| || | | || | |||||||| | ||| || || | || | || ||
Sbjct 79309 GATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACTTCCAATGTGATGGTCTT 79250
Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| || | ||||||||||||||| |||||
Sbjct 79249 TCCTGTTAAAGTTTTTACAAAAATTTGCAT 79220
>seq849
Length=33325
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461
||| || ||||||| | || || ||||| || ||||| || | ||| | |||
Sbjct 19183 CAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCGTC 19242
Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521
||| | |||||| || | | |||| | ||| |||||||| || || || ||||| |||||
Sbjct 19243 CTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTC 19302
Query 138522 GGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580
||| | |||| ||||| | || | || || | | ||| || || | || | |
Sbjct 19303 T-TGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTACTTCCAATGTTATAG 19361
Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
| || || |||| |||||| ||||||||||||||
Sbjct 19362 TCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395
Score = 82.4 bits (90), Expect = 8e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461
||| ||||| |||| | || |||||||| || ||||| || | ||| | ||
Sbjct 19411 CAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGATAGAGTTCTTCCATC 19470
Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521
||| ||||| || || | |||| | ||| |||||||| || || || ||||| |||||
Sbjct 19471 CTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTC 19530
Query 138522 GGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580
||| | |||| ||||| | || | || || | | ||| || || | || | |
Sbjct 19531 T-TGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAG 19589
Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
| || || |||| |||||| ||||||||||||||
Sbjct 19590 TCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496257108602160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |