Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq849 127 2e-24 seq445 111 1e-19 >seq849 Length=33325 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||||||||| |||| || | || ||||||||||||||||| ||||| Sbjct 19394 ATACCACCTCTGAGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCA 19453 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||| ||||||||| | ||||| ||||| ||||| || Sbjct 19454 GATAGAGTTCTTCCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGT 19513 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || |||||||| ||| ||| | || | || || |||| ||| Sbjct 19514 GGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCT 19573 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | || || || || | |||||| |||||||| ||||| Sbjct 19574 ACTTCCAATGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | || ||||| || | ||| | || ||||| ||||||||||| ||||| Sbjct 19166 ATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCA 19225 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || |||||||||||||| | ||||| ||||| ||||| || Sbjct 19226 GAGAGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGT 19285 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || |||||||| ||| ||| | || | || || |||| ||| Sbjct 19286 GGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCT 19345 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | || || || || | |||||| |||||||| ||||| Sbjct 19346 ACTTCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| ||||| || | ||| | || ||||||||||||||||| ||||| Sbjct 19622 ATACCACCTCTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCA 19681 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || |||||||| || || | ||||| ||||| || || || Sbjct 19682 GAGAGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGT 19741 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||||||||| ||| ||| | || | || || |||| ||| Sbjct 19742 GGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCT 19801 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | || || || || | ||| || |||||||| ||||| Sbjct 19802 ACTTCCAATGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 19851 >seq445 Length=134117 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || |||| ||| | ||| | || || ||||| || ||||| || || | ||| | Sbjct 79437 AGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGATAAAGTTCTG 79378 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| |||||||| |||||||| | |||| || || || || || |||||||| ||| Sbjct 79377 CCATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGAATGCCCTCT 79318 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 || || || || ||| || | || | ||||||||||| ||| ||||| | || Sbjct 79317 TTGTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACTTCCAATGTG 79258 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || |||| |||||||||||||||||||||| Sbjct 79257 ATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATC 79219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451998380515880