Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq290 104 3e-17 >seq290 Length=478353 Score = 104 bits (114), Expect = 3e-17 Identities = 350/538 (65%), Gaps = 18/538 (3%) Strand=Plus/Plus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 ||||||||||||| || | |||||||| ||| || ||||| | ||| ||| |||| Sbjct 253590 CCCACATATCAAATTGCAAGATACCTTTACTCGCAGGTGATCCAGAATATGACTCGTATG 253649 Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 | || || || || | || |||| ||||| || ||||||| |||||| |||| Sbjct 253650 GCCCATCTTTTTCTGCAAGCTCACAGCTAGCCTCAAGAGCTGCGTAATACATAACTTCAA 253709 Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAA 116242 |||| ||||| || || | || || ||| ||| | ||| || |||| Sbjct 253710 AAATTTCTTTATTCAGCTTTTTAGCTTTATCTGAGTCATACGGCATACGAAGCATCATAA 253769 Query 116243 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTC 116302 | |||||||| |||||||| |||| || | || |||||||| | ||| || ||| Sbjct 253770 AGCAGTCCGCGAGCCCTTGGACGCCGATTCCCAACGGACGATGTCTTAGATTTGAATTTT 253829 Query 116303 GAGCGGTCTCCACGGGATAAAAATTCCTA---TCGATAACCCTATTTAGATTTTTGGTGA 116359 | | ||| ||| || | | || | || | || |||||| ||| | || | Sbjct 253830 TA-CATTCTGGGAGGG--AATAGTACCCAAAGTCAACTACTTTATTTAAATTCCTCGTAA 253886 Query 116360 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT 116419 ||||| || | ||| | | ||| || ||| ||| | | |||| || || Sbjct 253887 TCACCTTCGTAACTTCCTTTAACTTGTCAAAATTAAATGTTTTGTTATCTTTATCAACGA 253946 Query 116420 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 116479 |||| || | |||| || ||||||||||| || | | ||||| | |||||| | Sbjct 253947 ACTTCGGTAACCCGATAGATGCCAGATTACAAACTGCAATTTCATCTCCACTAGTGTATT 254006 Query 116480 CTATAATTTCCGTACACAA---ATTTGA-ACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535 | || ||||| || || || | |||| || ||| || ||||| |||||||| || Sbjct 254007 CCATTATTTCTGTGCATAAGTTACTTGAGAC----AATAGTTCCCAAATTCTTTTGGTT- 254061 Query 116536 GACTTT--GTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 ||||| | || |||||||| || ||| ||||||| ||||| || |||| Sbjct 254062 -ACTTTTCCTATTTGCAGCATCCTTATAACAAATAAATGGCGTTCCCGTTTCAATTTG 254118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613500658479480