Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq290 104 3e-17
>seq290
Length=478353
Score = 104 bits (114), Expect = 3e-17
Identities = 350/538 (65%), Gaps = 18/538 (3%)
Strand=Plus/Plus
Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122
||||||||||||| || | |||||||| ||| || ||||| | ||| ||| ||||
Sbjct 253590 CCCACATATCAAATTGCAAGATACCTTTACTCGCAGGTGATCCAGAATATGACTCGTATG 253649
Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182
| || || || || | || |||| ||||| || ||||||| |||||| ||||
Sbjct 253650 GCCCATCTTTTTCTGCAAGCTCACAGCTAGCCTCAAGAGCTGCGTAATACATAACTTCAA 253709
Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAA 116242
|||| ||||| || || | || || ||| ||| | ||| || ||||
Sbjct 253710 AAATTTCTTTATTCAGCTTTTTAGCTTTATCTGAGTCATACGGCATACGAAGCATCATAA 253769
Query 116243 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTC 116302
| |||||||| |||||||| |||| || | || |||||||| | ||| || |||
Sbjct 253770 AGCAGTCCGCGAGCCCTTGGACGCCGATTCCCAACGGACGATGTCTTAGATTTGAATTTT 253829
Query 116303 GAGCGGTCTCCACGGGATAAAAATTCCTA---TCGATAACCCTATTTAGATTTTTGGTGA 116359
| | ||| ||| || | | || | || | || |||||| ||| | || |
Sbjct 253830 TA-CATTCTGGGAGGG--AATAGTACCCAAAGTCAACTACTTTATTTAAATTCCTCGTAA 253886
Query 116360 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT 116419
||||| || | ||| | | ||| || ||| ||| | | |||| || ||
Sbjct 253887 TCACCTTCGTAACTTCCTTTAACTTGTCAAAATTAAATGTTTTGTTATCTTTATCAACGA 253946
Query 116420 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 116479
|||| || | |||| || ||||||||||| || | | ||||| | |||||| |
Sbjct 253947 ACTTCGGTAACCCGATAGATGCCAGATTACAAACTGCAATTTCATCTCCACTAGTGTATT 254006
Query 116480 CTATAATTTCCGTACACAA---ATTTGA-ACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535
| || ||||| || || || | |||| || ||| || ||||| |||||||| ||
Sbjct 254007 CCATTATTTCTGTGCATAAGTTACTTGAGAC----AATAGTTCCCAAATTCTTTTGGTT- 254061
Query 116536 GACTTT--GTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591
||||| | || |||||||| || ||| ||||||| ||||| || ||||
Sbjct 254062 -ACTTTTCCTATTTGCAGCATCCTTATAACAAATAAATGGCGTTCCCGTTTCAATTTG 254118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613500658479480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |