Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq849 91.5 1e-13 >seq849 Length=33325 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 || ||||||||| |||||| ||| ||||| ||||| ||||| | | | | | | || Sbjct 19639 CAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAGAGAGTTCTTCCGTC 19698 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 || ||||||||||| |||| || ||||| || ||||| | || | ||||| || || Sbjct 19699 CTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATC 19758 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || ||| ||||| || | | ||| |||| || || ||||| || || || Sbjct 19759 TTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAGT 19818 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || ||||| || || || |||||||| Sbjct 19819 CTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 19851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347365988767349