Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq113 215 2e-50 seq579 192 2e-43 seq849 152 2e-31 seq401 150 7e-31 seq335 136 2e-26 seq845 116 1e-20 seq35 109 2e-18 seq34 107 8e-18 seq13 105 3e-17 seq445 102 3e-16 >seq113 Length=180777 Score = 215 bits (238), Expect = 2e-50 Identities = 479/713 (67%), Gaps = 12/713 (2%) Strand=Plus/Plus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 ||| ||||| |||||| | || ||||| | |||||||| ||||| | ||||| | Sbjct 159932 AGCTATTGGTATTGATTTAGGTACCACATACTCATGTGTTGGTGTATGGAGAAATGATAC 159991 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTAC 451032 ||||| ||| | ||||||| ||||| || || || || |||| ||| ||||| Sbjct 159992 GGTAGATATTGTCCCAAATGATCAAGGTAACCGTACAACACCATCATATGTAGCATTTAC 160051 Query 451033 GGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAA 451090 || | || | || | || | || || || ||||| || | |||| | | Sbjct 160052 AGAAACTGAGCGTCTCATTGGTGATGCAGCAAAGAATCAA--GTTGCTAGAAATCCAGAG 160109 Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 || ||||| | ||||||||||||| | ||||| | | | |||||| | | |||||| Sbjct 160110 AATACAGTTTTTGATGCTAAACGTCTTATTGGTAGGAAATTTGATGACCAGGCAGTACAA 160169 Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAA---TCAAAAAGGAAAGCCCTATATT 451207 | || | | || | | | | ||||| | || ||| | ||||| ||| Sbjct 160170 AGTGATATGACTCACTGGCCATTTAAAGTAGTTAGAGGTCCAAAGGACAAGCCAATCATT 160229 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 |||| ||| ||||| | || || | | || || ||||| |||||||| Sbjct 160230 AGTGTAAGCTATTTGGGTGAGAAGAAGGAATTCCATGCCGAGGAGATTTCTGCTATGGTT 160289 Query 451268 CTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGT 451326 |||| ||| ||||| |||| | ||| ||| | ||| ||| ||| |||| || Sbjct 160290 -TTACAAAAGATGAAGGAAATCTCTGAAGCATACTTGGGTCGCCCAATTAAGAATGCTGT 160348 Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386 | ||||||| || ||||| |||||||| ||||||| |||||||| || ||||| || Sbjct 160349 AGTTACTGTACCAGCTTACTTCAATGACTCACAACGTCAAGCAACAAAGGATGCTGGTGC 160408 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446 ||||||||||| ||||| | |||| |||||||| || || ||||||||| | || || Sbjct 160409 AATTGCTGGTTTGAATGTAATGAGAATCATTAATGAGCCAACTGCAGCTGCTATTGCTTA 160468 Query 451447 TGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 || || | || ||||| ||| | || | |||| |||| | || ||||| ||||| Sbjct 160469 CGGTCTTGATAA---AAAAGGAACCGGTGAGAGAAATGTTTTGATCTTCGATTTAGGTGG 160525 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || ||| |||| || || | | ||||| ||||| | |||||||| ||||| || Sbjct 160526 TGGTACTTTTGATGTATCATTATTAACTATTGAGGATGGTATTTTTGAAGTTAAGGCTAC 160585 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGAAT 451619 |||||| ||||| | || |||||||| ||||||| | |||| |||| Sbjct 160586 TGCTGGTGACACTCACTTGGGTGGTGAAGACTTTGATAACAGACTTGTAGAAT 160638 >seq579 Length=144132 Score = 192 bits (212), Expect = 2e-43 Identities = 460/692 (66%), Gaps = 19/692 (3%) Strand=Plus/Minus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||| || ||| | || || || | ||||||||| ||| | ||| ||||||| | ||| Sbjct 66626 ATTGGTATCGATTTAGGTACTACTTATTCATGTGTTGGTATCTACAAAAATGGTAGAGTA 66567 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 ||||| || ||||||| || || || | ||| || || | ||| ||||| ||| Sbjct 66566 GAAATCATTCCAAATGAACAGGGCAACCGTATTACACCATCTTATGTATCATTTACTGAT 66507 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCAAAAACAC 451095 || ||| | | || | | ||||| | | | | || | |||| | | | || Sbjct 66506 GATGAGAGATTGATCGGTGAGTCAGCTAAGAACCAAGCTACAATCAA-TCCAGTTCAGAC 66448 Query 451096 AGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGA 451155 | | | |||| ||| | | || |||||| | | | ||||| | || ||||| || Sbjct 66447 ATTGTTCGATGTGAAAAGACTTATCGGCCGTCGTTTTAAGGATGACTCCGTCCAAAAGGA 66388 Query 451156 GAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGA----AAGCCCTATATTCAAG 451211 || | || || | ||||| | || ||| ||||| ||||| || || || | Sbjct 66387 TAAGACTTTGTTACCATATGAGATTGT----CAACAAGGACAGCAAGCCTTACATACAGG 66332 Query 451212 TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271 | | | || ||||| | ||| || ||||| ||||| |||| |||||||| | Sbjct 66331 TTACTGTCAAGGGTGAGAAGAAACAATTGGCTCCAGAAGAGGTTTCTGCTATGGTTTTAG 66272 Query 451272 CTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTA 451331 ||||||||| || | || ||| ||| | || ||| | | || ||||||| Sbjct 66271 TTAAAATGAAGGAGATTGCTGAAGCTTATCTCGGAAAGGAAGTCAAGCACGCTGTAATTA 66212 Query 451332 CTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTG 451391 ||||||| ||||| || |||||||| || || ||||| ||||| ||||| || ||||| Sbjct 66211 CTGTTCCAGCTTACTTTAATGATGCTCAGCGTCAAGCCACTAAGGATGCTGGTGCTATTG 66152 Query 451392 CTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGAC 451451 ||||||| ||||| | || || |||||||| || ||||| || ||| | || | ||| Sbjct 66151 CTGGTTTGAATGTAATCCGTATCATTAATGAGCCAACAGCGGCAGCTATTGCTTTTGGTT 66092 Query 451452 TAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAA 451511 | | | ||||| | || || | ||||| |||| ||||| ||||| || | Sbjct 66091 TGG-------ATAAGAA--GGCTGAGAAGAGCATTTTGGTATACGATTTGGGTGGTGGTA 66041 Query 451512 CTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATG 451571 || |||| ||| | | | || || |||| || |||||||| || || | || Sbjct 66040 CTTTTGATGTTTCCCTCTTGACCATCGACAATGGCGTTTTTGAAGTCGTTGCCACAAGTG 65981 Query 451572 GTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 ||||||| ||| |||||||||||||| | ||| Sbjct 65980 GTGATACCCATTTAGGAGGTGAAGATTTCGAT 65949 Score = 132 bits (146), Expect = 2e-25 Identities = 325/487 (67%), Gaps = 13/487 (3%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 || ||||| ||||| ||||| ||||||||||| || ||||| | ||| || ||||| Sbjct 65561 AACCCTGACGAAGCCGTTGCTTATGGTGCTGCTGTACAAGCTGGTATCTTAGCAGGT--- 65505 Query 452051 GATGATGAAAAATTAG-GAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGT 452109 || | || ||| || |||| | | | ||||| |||||| || || | || | Sbjct 65504 GAGGGTGG-----TAGCGACTTATTATTGTTG--GATGTTACACCTTTAACTTTGGGTAT 65452 Query 452110 TGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAA 452169 ||| || | ||||||| | ||||| || | ||| || ||| | |||| || Sbjct 65451 TGAGACTGTTGGTGGAGTTATGACCAAGCTCATTGGTAGAAACACTGTTGTTCCAACAAA 65392 Query 452170 AAAGAGTCAAACATTTAGTACAG-CAAGTGATAACCAACCAGGTGTAACTATTCAAGTGT 452228 ||||| ||| |||||||| | || ||||| || |||| ||| ||| ||||| | Sbjct 65391 GAAGAGCCAAGTTTTTAGTACTTACCAG-GATAATCAGCCAGCCGTACTTATCCAAGTTT 65333 Query 452229 TTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAA 452288 |||||| || ||| ||||||| || || || || ||| | || ||||| Sbjct 65332 ATGAAGGTGAGCGTCCAATGACCAAGGACAACAACCTCCTCGGAAAGTTCGAGCTTTCTG 65273 Query 452289 ACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAA 452348 || || ||| ||||| || |||||||||||| |||| | ||| ||||| | Sbjct 65272 GAATCCCCCCTGCTCCAAGAGGTGTTCCTCAAATTGAGGTTACTTTTGAAATTGATACTG 65213 Query 452349 ATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACAA 452408 |||||||| | | || |||||| || || |||| ||||| || |||||||| | Sbjct 65212 ATGGTATTTTACAAGTCAGTGCAAAGGACAAGGGTACTGGTAAATCTGAGAAAATTACCA 65153 Query 452409 TTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAG 452468 | || |||||||| | | | || | |||||||||||| ||| | | || |||| Sbjct 65152 TCACAAATGATAAGGGCAGACTTTCACAGGAAGATATTGAACGTATGATTAAGGAGGCAG 65093 Query 452469 AAAAATT 452475 | |||| Sbjct 65092 AGCAATT 65086 >seq849 Length=33325 Score = 152 bits (168), Expect = 2e-31 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| |||||||| |||| || || ||||| || | || || || | || Sbjct 19623 ATGCAGATTTTTGTTAAAACTTTGACAGGAAAGACTATCACATTGGAAGTAGAGCCTTCA 19564 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | ||||| ||| |||||||| |||||||||||||| || || ||| Sbjct 19563 GATACAATTGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAA 19504 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || ||| |||| || ||||| || |||||||||||| | | ||||| ||| Sbjct 19503 CAACGTTTGATCTTCGCAGGAAAGCAACTAGAGGATGGAAGAACTCTATCTGATTACAAT 19444 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || | |||||||| || || || ||||| Sbjct 19443 ATCCAAAAGGAATCCACTTTACACTTAGTCTTGAGGCTCAGAGG 19400 Score = 152 bits (168), Expect = 2e-31 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| ||||| || |||| || || ||||| || | || || || | || Sbjct 19851 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACATTGGAAGTAGAGCCTTCA 19792 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | ||||| ||| ||||||||||||||||||||||| ||||||||| Sbjct 19791 GATACAATTGAGAATGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCACCTGATCAA 19732 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || || | ||||||||| | || || ||||||||| | | ||||| ||| Sbjct 19731 CAACGTTTGATCTTTGCGGGGAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAAT 19672 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || | || || ||||| ||||| ||||| Sbjct 19671 ATCCAAAAGGAATCCACTTTACATTTGGTATTGAGACTCAGAGG 19628 Score = 134 bits (148), Expect = 5e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| |||||||| |||| || || ||||| || | || || || | || Sbjct 19395 ATGCAGATTTTTGTTAAAACTTTGACGGGAAAGACTATAACATTGGAAGTAGAGCCTTCA 19336 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | ||||| ||| |||||||| |||||||||||||| || || ||| Sbjct 19335 GATACAATCGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAA 19276 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || || |||| |||||| | || || ||||||||| | | ||||| ||| Sbjct 19275 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAAT 19216 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | || || | || | || || ||||| ||||| ||||| Sbjct 19215 ATCCAAAAAGAATCCACTTTACATTTGGTATTGAGACTTAGAGG 19172 >seq401 Length=300945 Score = 150 bits (166), Expect = 7e-31 Identities = 202/281 (72%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || ||||||||||| || || ||||| |||||| | ||||| ||||||||||| || || Sbjct 205453 GCTGTAATTACTGTGCCAGCCTATTTTAATGATTCTCAACGTCAAGCAACTAAGGACGCG 205512 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||| || ||||||||||| |||| ||||| ||||| |||||||| ||| | Sbjct 205513 GGCTCTATAGCAGGTTTAAATGTGACAAGAATCATTAACGAACCAACAGCAGCAGCTTTG 205572 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 ||||| ||| | ||| | || | || | |||| ||| ||| | |||||| Sbjct 205573 GCATACGGAAT-GGAGA--------AAGCCGATGGTAAAACAATTGCAGTTTATGATTTG 205623 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 || ||||| ||| ||||| |||| | | || | || |||||||| ||||| Sbjct 205624 GGAGGAGGCACTTTTGATATTTCTATTTTAGAGATCCTTGGGGGAGTATTTGAGGTAAAA 205683 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 ||||| ||||| ||||| ||||||||||||||| |||| Sbjct 205684 GCAACAAATGGAAATACTTCCCTAGGAGGTGAAGATTTTGA 205724 Score = 89.7 bits (98), Expect = 2e-12 Identities = 279/429 (65%), Gaps = 20/429 (5%) Strand=Plus/Plus Query 451967 GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTT 452026 |||| | ||| || || | || || |||||||| || |||||| || |||||| | Sbjct 206098 GGAAGAGAACCATCAAAAGGAGTTAACCCTGATGAGGCCGTTGCAATGGGAGCTGCAATA 206157 Query 452027 CAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGAT 452086 || || | | || | | ||| | |||| | | ||| || ||||| | ||| Sbjct 206158 CAGGCTGGTGTTTTGAAAGG-----------AGAAATCAAG-GATCTTTTGTTACTTGAT 206205 Query 452087 GTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAA 452146 || || ||| ||||| | || | ||||| |||||| | | ||| ||||||| Sbjct 206206 GTTACTCCTTTATCTTTAGGTATCGAAACTTTGGGTGGAGTTTTTACTCGACTAATTAAT 206265 Query 452147 CGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAA 452206 || || | || || ||| ||||| ||| ||| || ||| ||||||||| Sbjct 206266 AGAAACACCACGATCCCCACTAAGAAGAGCCAAGTATTCTCCACTGCAGCGGATAACCAA 206325 Query 452207 CC--AGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATA 452264 | |||| | ||| | || || | |||||| | | | | | |||||||| Sbjct 206326 ACTCAGGTTGGA--ATTAAGGTTTTCCAGGGAGAAAGAGAATTTGCTGCTGATAATAAGT 206383 Query 452265 AACTAGGAGAATTT--ACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAAT 452322 ||| ||| ||||| | | | || ||||||| || |||||| ||||||||| Sbjct 206384 TACTTGGACAATTTGAAATGATGGGAA--TTCCTCCAGCCCCTAGGGGAGTTCCTCAAAT 206441 Query 452323 TGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATC 452382 |||| | || | |||| ||||||| ||||| ||| | ||||| |||| |||| || || Sbjct 206442 TGAAGTAACTTTTGATATTGATGCGAATGGAATTATGAATGTTGGTGCTATTGATAAGTC 206501 Query 452383 ATCTGGAAA 452391 | ||||||| Sbjct 206502 AACTGGAAA 206510 >seq335 Length=109725 Score = 136 bits (150), Expect = 2e-26 Identities = 287/423 (68%), Gaps = 15/423 (4%) Strand=Plus/Plus Query 364565 TATTCCATCTTTAGTTGATGGATTTAAACCTTCTCAAAGAAAAATTTTTTATGGAGCAAA 364624 ||||||| |||| | |||||||| |||||| ||||||||| | ||| || | || Sbjct 4085 TATTCCAAATTTATTGGATGGATTAAAACCTGGCCAAAGAAAAGTACTTTTTGCAACA-- 4142 Query 364625 TTTAAGAGGATTAGAAAAAGATCAAGTAAAAGTAGCTCAATTAGCAGGTTTTGTATCTGA 364684 ||||| | || || | || || | ||||| || |||||||| |||| ||| |||| Sbjct 4143 TTTAAAAAGAAACTTAATA-ATGAACTTAAAGTTGCACAATTAGCTGGTTATGTTGCTGA 4201 Query 364685 CCGGGTAGCTTATCATCACGGTGAGGCAAGTTTAATGGGAGCAATAATTGGAA---TGGC 364741 | ||||| || ||||| || || | | || | | |||| || |||| Sbjct 4202 ACATAGCGCTTACCACCACGGAGAATCA---TCATTGCAAAGTACTATTGTAAACATGGC 4258 Query 364742 ACAAAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTTGGAAG 364801 |||||||||||||||||||| ||| | |||||| ||||||| || |||||||| || Sbjct 4259 TCAAAATTTTGTTGGAAGTAACAATCTTAATTTATTAGAACCTTGTGGTCAATTTGGTAG 4318 Query 364802 TCGAGTAATGGGAGGTAAAGATTCTGCCAGC---CCACGTTATATTTGGACCAAACTTGA 364858 | || ||| || ||||| ||| ||| | |||||||| | || || || Sbjct 4319 TAGAAAGGAGGGCGGAAAAGA---TGCAAGCGCTGCTCGTTATATATTTACTAAGCTATC 4375 Query 364859 AAAAGTGGCAGGATTAATATTTAGAAAAGAAGATAATCCAATTTTAAATTATATTAATGA 364918 |||| | | ||| ||||| | ||| ||| |||| | |||| ||| | |||| Sbjct 4376 AAAATGGACTAGATATATATTCCCAGAAGCTGATGATCCTTTATTAACTTACTTATATGA 4435 Query 364919 TGATGGATTAATGGTTGAACCTGAATTTTATCTTCCTATTATTCCTATGATTTTAGTAAA 364978 ||||||| | |||| ||| || ||| |||| || ||||| |||||||| || || Sbjct 4436 TGATGGACAACAAATTGAGCCTTTATATTACGTTCCAATAATTCCAATGATTTTGGTGAA 4495 Query 364979 TGG 364981 ||| Sbjct 4496 TGG 4498 Score = 123 bits (136), Expect = 1e-22 Identities = 402/599 (67%), Gaps = 44/599 (7%) Strand=Plus/Plus Query 363743 AGGAATTCCTAAACTAGAAGATGCTAATAAAGCAGGAACAAAAGATGCTCATAAATGTGG 363802 |||||| || ||||| |||||||| || | || || | || || | ||||| Sbjct 3275 AGGAATCCCAAAACTTGAAGATGCAAACGAGGCTGGTGGACCCCATTCTAAAAAATGCAC 3334 Query 363803 ATTA-TATTTAGCAGAGGGAGATTCTGCTCT---TTCTATGATTCTGTCAGGGTTATCAA 363858 || || ||| |||| |||||||||||| |||| || | || |||| | || | Sbjct 3335 TCTAATACTTA-CAGAAGGAGATTCTGCTAAAACTTCT-TGCCT-TG-CAGGACTCTCTA 3390 Query 363859 GTAAAGATAGAAATTTTTATGGTGCCTTTCCGTTAAAAGGAAAATTATTAAATGTAAGAG 363918 | || ||| | | || ||| | ||||| ||| |||||| | |||||||| |||| Sbjct 3391 TTGTAGGCAGAGACTATTTTGGAGTATTTCCATTACGTGGAAAACTTTTAAATGTTAGAG 3450 Query 363919 AAGCATCAGTTAAACAAATTATGGGAAATGATGAGATATCAAACCTTaaaaaaaTTTTAG 363978 |||| ||| |||||||| || || || | || ||| ||| || ||||| || | Sbjct 3451 AAGCTTCATTTAAACAACAAATTGGTAACGTAGAAATACAAAATATTCTTAAAATATTGG 3510 Query 363979 GATTACGTAATGAATTTAAATATGAAATGGATGAAGAATTTAATACTTTAAGATATGGAA 364038 ||||| ||| || |||||||| | ||| | | |||| |||||||||||| Sbjct 3511 GATTAGGTATTGGCCAAAAATATGATA---ATGGACCAGTTAAC---TTAAGATATGGAT 3564 Query 364039 AAGTAATAATTTTATG--TGATTCAGATGTAGATGGAAGTCATATTAAGGGACTAATTTT 364096 |||| || ||| |||| |||| ||||| ||||||||||| ||||||||| | Sbjct 3565 CTTTAAT--GTTAATGACTGATCAAGATCATGATGGTAGTCATATTAAAGGACTAATTAT 3622 Query 364097 AAATATGTTTCA-TAGTATGTGGCCTAATCT-TTTAAAAAGAGAAGGTT-TTATTACAAC 364153 || | | || || ||| ||||| | | | || | ||| | || ||| |||| Sbjct 3623 TAACTTAATACATTATTAT-TGGCCAAGTTTAATTCATTTTAGAGGATTCTTAAAACAA- 3680 Query 364154 TATGAACACTCCAATTGTTAAAGCAACAAAAGGA---AAAGAAATATTAAAATTTTATAA 364210 | || ||||||||||||||||||| ||||||| || ||||| | ||||| || Sbjct 3681 TTTG-TTACTCCAATTGTTAAAGCAAAAAAAGGATCCAATGAAATTT---CATTTTTTAC 3736 Query 364211 TTTAACTGATTATGATAATTGGAGAAATGATAAT------AATACAAAAGGATATTATAT 364264 ||| ||| || || | |||||||| ||||| || ||| |||| | || Sbjct 3737 CTTATATGAATACGAGCAATGGAGAAAGAATAATTCATCAAACTTAAATGGAT-GGAGAT 3795 Query 364265 T-AAATATTACAAAGGATTAGGAACATCT---GATTCTAAAGAAGCTAAAGAATATTTT 364319 | || ||||| ||||| ||||| |||||| || ||| ||| |||||| |||||| Sbjct 3796 TCAAGTATTATAAAGGTTTAGGCACATCTACAGA-TCT--TGAATTTAAAGAGTATTTT 3851 >seq845 Length=51946 Score = 116 bits (128), Expect = 1e-20 Identities = 126/166 (76%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 248780 TGAAAGCTAGAATTTTCATTGGTCCTATGTTTTATTTGAGACTTAAACATATGGTACTTG 248839 ||||| ||| | |||| |||| ||||| | |||| || | | ||||||||||| |||| Sbjct 8433 TGAAACCTATATTTTTG-TTGGACCTATTTATTATCAGAAATTGAAACATATGGTTCTTG 8491 Query 248840 ATAAAGTTCATTCCAGAAGTATGGGTCCTAGACAAGCTATTACTAGACAACCCATGGAAG 248899 ||||| | ||| | ||| | | |||||||||||| | | || |||||||||| |||| Sbjct 8492 ATAAAATGCATGCAAGAGGAAGAGGTCCTAGACAAATTCTCACCAGACAACCCACTGAAG 8551 Query 248900 GACGTTCTAAAGATGGAGGTCTTAAAATTGGAGAGATGGAAAAAGA 248945 || | ||||| |||||||| || |||| |||||||||| ||| Sbjct 8552 GAAGATCTAAGGATGGAGGACTACGTCTTGGTGAGATGGAAAGAGA 8597 >seq35 Length=319104 Score = 109 bits (120), Expect = 2e-18 Identities = 172/239 (72%), Gaps = 12/239 (5%) Strand=Plus/Minus Query 437616 TGTCGTATAATTGGCTTAACACTTGAAACACGACCTGATTTTATTACTCCGAAAGAAAT- 437674 ||| | ||||||||||||||| | |||||| |||| |||| |||||||| | ||||| Sbjct 168119 TGTAGAATAATTGGCTTAACATTAGAAACAAGACCAGATTATATTACTCTAGATGAAATA 168060 Query 437675 -TACAATTCTTCGAAGTTATGGATGTACCAGAGTACAACTTGGAATTCAACATATCAATG 437733 | || | || ||| ||| ||||| || |||||||||||||| || || || || Sbjct 168059 CTCCAGCTAAGGGA-GTT-TGGGTGTACTAGGGTACAACTTGGAATCCAGCA---CACTG 168005 Query 437734 ATGATA---TTTTGAATTACATTAATCGAGGGTGTAA-ACACAGTAAGTCAGTGAGAGCA 437789 || || | || || ||||||| |||| ||| | | | || || || | | Sbjct 168004 ATTATTGGGTCTTAAAGCTCATTAATAGAGGTTGTTATATGCGCCAAATC-GTAAAGTCG 167946 Query 437790 ATCAAACTACTTAAAAATGCTGGTTTTAAGGTGGATATTCATTTGATGCCAGATTTGCC 437848 || | |||||||||| || |||| | ||| || |||||||| |||||||||||||| || Sbjct 167945 ATTAGACTACTTAAAGATACTGGATATAAAGTAGATATTCACTTGATGCCAGATTTACC 167887 >seq34 Length=9231 Score = 107 bits (118), Expect = 8e-18 Identities = 141/195 (72%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 96115 TACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAACAAATTGC 96174 |||| | || | | | || || || |||||| || |||||||||||| | ||||| || Sbjct 7564 TACTGTTCTGAGGGTCAAAGCAGGACTCCAGGCATCTTTTAAAATATCCAGGCAAATAGC 7623 Query 96175 ACCTGTAGTACTA---ATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTAGGAGG 96231 ||||| |||| ||||||||||| |||| || | ||| ||| ||| ||||| Sbjct 7624 TCCTGTTTGACTAGAAATATTTGGATGCCAAATTCTTGTGATGAATTTAACTTTTGGAGG 7683 Query 96232 CTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCATAGGG 96291 | ||||||||| |||| |||| | |||| || | |||||||| || || ||||| || Sbjct 7684 TTCATATGGATATTCTTTTGGAACAATAATATCAAGTTGGAATATCCCTCCTTCATATGG 7743 Query 96292 TGTTCCTGAAGGGCC 96306 ||| || |||||| Sbjct 7744 TGTCCCCATAGGGCC 7758 >seq13 Length=173107 Score = 105 bits (116), Expect = 3e-17 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 412289 TTCCAAAACGACCACTTCTACCAATTCTATGTATAAAAGTTTCATGATTTTTAGGTAAAT 412348 ||||||| || |||||||| ||||||||||| ||| | ||| | ||| |||||| | Sbjct 157435 TTCCAAATCGGCCACTTCTTCCAATTCTATGAATATATAGTTCTTTATTAGTAGGTAGGT 157376 Query 412349 CATAATTTATAACTAATTTAACCTCAGGAATATCTATCCCCCGTGCTAATAAATCAGTTG 412408 ||||||| | |||||| || || | | | ||| || || | | | ||||||| |||| Sbjct 157375 CATAATTGACAACTAAGTTGACTTGTTGTACATCAATACCTCTTCCCCATAAATCTGTTG 157316 Query 412409 TTAATAAAATTCGTGTTTTTCCCTCTCTAAATTCATCTACAATTTTACTTCT 412460 | | ||||| || ||||| || |||||||| || ||| |||| || ||||| Sbjct 157315 TAATTAAAACCCGAGTTTTCCCATCTCTAAACTC-TCT-CAATATTTCTTCT 157266 Score = 100 bits (110), Expect = 1e-15 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 163322 AACAAAAAGTTGGAAATTTTAAAATAGAACCTCCTGGTATATTTTTAGGTAGAGGTTCCC 163381 || |||||||||||||||| | ||| || || ||||| | ||| ||||||||| | Sbjct 28129 AAGAAAAAGTTGGAAATTTCAGAATTGAGCCACCTGGGCTGTTTAAAGGTAGAGGAGAGC 28188 Query 163382 ATCCAAAAATAGGAAAATGGAAAAGAAGAATATATCCAGAAGATGTTATTTTAAATTTAG 163441 ||||||| ||| | | ||||||| |||||| || |||||||| | ||||||| | | Sbjct 28189 ATCCAAAGTCAGGCATGTTGAAAAGACGAATATTCCCTGAAGATGTAACTTTAAATATTG 28248 Query 163442 ATAAAAATGCACCTATTCCAAAG 163464 || |||||||| |||||||| Sbjct 28249 CGGAAGATGCACCTGTTCCAAAG 28271 >seq445 Length=134117 Score = 102 bits (112), Expect = 3e-16 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| | || || || || || || | || ||||| | || Sbjct 79220 ATGCAAATTTTTGTAAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCC 79279 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | |||| ||| || || || || || || ||||| ||||||||| Sbjct 79280 GACACCATTGAGAATGTTAAGGCAAAGATCCAGGACAAAGAGGGCATTCCACCTGATCAA 79339 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || |||| || ||| | |||||||| |||||||| | || || ||| Sbjct 79340 CAGCGTCTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTTTATCTGACTACAAT 79399 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | ||||| | || | || || || | ||||| ||||| Sbjct 79400 ATTCAGAAGGAGTCTACCTTACATTTGGTGCTGAGACTTAGAGG 79443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975696807250124